F02346

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02346

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02346

Determination of introduced cDNA(s)

  • RAFL05-18-J16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-J16 - Resource: pdz87519

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-J16 - 5 prime EST 
    GAAAGAGAAG TCGAAATGCC AGTTTCAGCT CCATCTCCGC CTCGTCTTCA 
    TTCTCCGTTC ATTCACTGTC CCATCAATTT CACTCCTTCT TCTTTCTCGG 
    CGAGGAATCT CCGGTCGCCG TCAACATCTT ATCCCCGAAT CAAAGCTGAA 
    CTCGATCCCA ACACGGTAGT CGCGATATCT GTAGGCGTAG CAAGCGTCGC 
    ATTAGGAATC GGAATCCCTG TGTTCTACGA GACTCAAATC GACAATGCGG 
    CTAAGCGAGA GAATACTCAA CCTTGTTTTC CCTGTAATGG CACCGGAGCT 
    CAGGAGGATC CAAAAGAAAA GAGGAAAAAA TGGACTATAT GTATGGACCA 
    GGGAGACACC ATCTGTTTGT ACCAGGACCA GTGAACATAC CGGAACCGGT 
    AATCCGGGCG ATGAACCGGA ACAACGAGGA TTACCGGTCA CCAGCCATTC 
    CGGCGCTTAC GAAAACATTG TTGGAGGATG TTAAGAAGAT ATTCAAGACC 
    ACATCAGGGA CACCTTTTCT GTTTCCCACG ACCGGGACTG GTGCTTGGGA 
    GAGTGCCTTG ACCAACACGT TATCTCCTGG AGACAGGATT GTTTCGTTTC 
    TGATTGGACA ATTTAGCTTG CTCTGGATTG ACCAGCAGAA GA

    Gene models with high sequence identity

    1. AT2G13360.2 [+] show detail - alanine:glyoxylate aminotransferase
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-J16 - 3 prime EST 
    CAATAAGTTT GTTGGAGATA GCAAATAAAA ACATAGATAA TGTAGTAAAA 
    ATATAGATGA AGAAAAGAGA AAACATGAGA GTTTGTTTAC ATTGAGAGGA 
    AGAGAAAGAA AGAGAAGGAC CACATGGATT AGATTCTAGA GGGAATGAGA 
    GGAATGTGGT GCTGAAGATA AGTAGAGGCA GCTGCAACTC CACTTCCCAT 
    TACAACTGGG TATCCAACAT CCTTCAGTAT CATCTCCACT CCCGCAAGAC 
    ACCCGAGAAG TTGCAACTCA TTCACATTTC CTAGGTGTCC AATTCTGAAA 
    ACCTTTCCAG CCACTTTGTT GAGACCAAGA CCAAGACTTA AGTTGTACCT 
    CTGCCATGCC CTTCTCACAA TCTCCGAACC GTCTATATGC GGAGGCACCA 
    TAACTGCTGT CACTGTGTTA CTTATCCATT CCTCCTTCTG TGTGCAGTTT 
    TTCAGCCCCC ATGCTTCCAC CGCAAGCCTG GTGGCCTTTC CCAAACGAGC 
    ATGGCGGGCG ATGATGTTCT CAAGTCCTTC CTCAAAGATA AGATCAAGAG 
    CAGCTCTAAG ACCGTAGAGA AGTTGAATGG AAGGTGTGTA TGGCCAATA

    Gene models with high sequence identity

    1. AT2G13360.2 [+] show detail - alanine:glyoxylate aminotransferase
      E-value: 0; Score: 100.00

    AT2G13360.2

    Model type
    Protein coding
    Short Description
    alanine:glyoxylate aminotransferase
    Curator Summary
    Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration.
    Computational Description
    alanine:glyoxylate aminotransferase (AGT); FUNCTIONS IN: serine-pyruvate transaminase activity, serine-glyoxylate transaminase activity, alanine-glyoxylate transaminase activity; INVOLVED IN: photorespiration; LOCATED IN: apoplast, peroxisome, plasma membrane, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Aminotransferase class-V pyridoxal-phosphate binding site (InterPro:IPR020578), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); Has 6407 Blast hits to 6405 proteins in 1610 species: Archae - 309; Bacteria - 3905; Metazoa - 186; Fungi - 125; Plants - 148; Viruses - 0; Other Eukaryotes - 1734 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR