F02428

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02428

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02428

Determination of introduced cDNA(s)

  • RAFL05-15-L01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-L01 - Resource: pda07330

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-L01 - full reading 
    ACTGGCCCAA GTCATTCAAC AACTTGGCTT TTATCTAATA AAGCCCCTCC 
    CTCTCCGATA AACCTTAAAT AAAACCGGAG GGAGAGCAAA AAATAAAAAC 
    AAAAATATAC AAAAACAAAA ACAAAAAATC ATAAAAAATG ATTGGAAAAG 
    TTGTGGTCTC GGTGGCCTCC ATCCTCTTAA TAGTTGGAGT TGCCATAGGA 
    GTCGTTGCCT ACATAAACAA AAATGGTGAT GCTAATCTGT CTCCCCAAAT 
    GAAAGCGGTC CGAGGAATTT GCGAGGCGAC TTCCGACAAA GCCTCATGTG 
    TCAAAACTCT CGAGCCGGTC AAGAGCGATG ACCCAAACAA GCTGATCAAG 
    GCTTTCATGC TCGCTACCAG AGATGCTATA ACCCAATCAT CAAACTTCAC 
    GGGTAAAACC GAAGGAAACT TGGGTTCGGG CATCTCGCCA AACAACAAAG 
    CCGTTCTTGA TTACTGCAAG AAAGTTTTCA TGTACGCGCT TGAGGATCTC 
    AGCACCATTG TTGAGGAAAT GGGTGAAGAT CTTAACCAGA TCGGGAGCAA 
    AATCGACCAG CTTAAACAAT GGTTAACCGG TGTTTACAAT TACCAAACTG 
    ATTGTCTTGA CGATATCGAA GAAGATGATT TAAGAAAGAC TATTGGAGAG 
    GGCATTGCAA GCTCCAAGAT TCTCACTAGC AACGCTATTG ACATCTTCCA 
    CACTGTCGTT AGCGCCATGG CCAAGCTTAA CTTGAAGGTC GAGGACTTCA 
    AGAACATGAC AGGCGGAATC TTCGCTCCTT CAGACAAAGG AGCAGCTCCC 
    GTCAACAAAG GAACCCCTCC TGTTGCTGAT GATTCTCCCG TGGCCGATCC 
    AGATGGTCCT GCTCGCCGTC TTCTTGAAGA CATTGACGAG ACCGGAATCC 
    CAACATGGGT TTCAGGTGCT GACAGGAAGC TCATGACTAA GGCTGGACGT 
    GGCAGTAATG ACGGTGGTGC TAGGATCAGA GCAACCTTTG TGGTGGCTAA 
    GGACGGAAGT GGACAGTTTA AGACTGTTCA ACAAGCCGTT AATGCTTGTC 
    CTGAGAAAAA CCCAGGCCGT TGCATCATCC ACATCAAGGC TGGTATCTAC 
    AGAGAGCAAG TGATCATCCC TAAGAAGAAG AACAACATCT TCATGTTCGG 
    AGATGGTGCA AGAAAGACCG TCATTTCTTA CAACAGAAGT GTTAAACTCA 
    GCCCTGGAAC CACCACTTCC CTTAGTGGCA CAGTCCAGGT TGAGTCCGAA 
    GGATTCATGG CAAAATGGAT CGGATTCAAG AACACCGCCG GTCCAATGGG 
    ACACCAAGCT GTGGCTATCA GAGTGAACGG AGACCGTGCC GTGATCTTCA 
    ACTGCAGGTT CGACGGTTAC CAAGACACCT TGTACGTCAA CAATGGTCGT 
    CAGTTCTACA GAAACATTGT CGTGTCAGGA ACAGTCGACT TCATCTTCGG 
    CAAATCCGCA ACCGTGATCC AAAACTCACT CATTGTTGTC CGTAAAGGAA 
    ACAAGGGACA ATTCAACACG GTCACAGCCG ATGGAAACGA AAAGGGTCTA 
    GCGATGAAAA TCGGTATCGT CCTCCAAAAC TGTCGCATCG TTCCCGACAA 
    GAAACTAGCG GCAGAGAGAT TAATCGTGGA GTCATACTTG GGAAGGCCAT 
    GGAAGAAATT CTCTACCACC GTGATTATCA ACTCCGAGAT AGGAGATGTG 
    ATTAGACCAG AAGGTTGGAA GATTTGGGAT GGGGAAAGTT TCCACAAGTC 
    ATGTAGGTAC GTTGAGTACA ACAACCGTGG ACCAGGAGCT ATCACTAACC 
    GAAGAGTTAA CTGGGTTAAG ATCGCCAGGT CTGCAGCTGA GGTCAATGAC 
    TTCACTGTTG CTAACTGGTT AGGTCCTATT AACTGGATTC AAGAAGCCAA 
    TGTTCCCGTC ACGCTTGGAT TATAAGGCGT ATAAATCAAA TCAAATCAAA 
    CC

    Gene models with high sequence identity

    1. AT2G47040.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pectinesterase, catalytic 1.5e-111
    HMMPfam Pectinesterase inhibitor 7.2e-20
    HMMSmart Pectinesterase inhibitor 1.7e-32
    HMMTigr Pectinesterase inhibitor 3.1e-05
    superfamily Pectin lyase fold/virulence factor 2.3e-97
    superfamily Pectinesterase inhibitor 1.4e-16
    PatternScan Pectinesterase, active site 0
    PatternScan Pectinesterase, active site 0
    Gene3D Pectinesterase inhibitor 1.7e-05
    Gene3D Pectin lyase fold 6.6e-110

    See the detailed result >

    AT2G47040.1

    Model type
    Protein coding
    Short Description
    Plant invertase/pectin methylesterase inhibitor superfamily
    Curator Summary
    Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.
    Computational Description
    VANGUARD1 (VGD1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G47030.1); Has 2977 Blast hits to 2908 proteins in 464 species: Archae - 6; Bacteria - 891; Metazoa - 1; Fungi - 197; Plants - 1856; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR