F02447

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02447

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02447

Determination of introduced cDNA(s)

  • RAFL09-20-L07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-L07 - Resource: pda05587

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-L07 - full reading 
    ACATATCAAT GTTAATTTGT ATATAAGGAG CTAAGAACAA ACCCAATTAG 
    GCAACTAGCA ATTGCTAAAA CACGTAAGAT CTCAAATATG ACCACGTTAT 
    TCCTCCTTAT TGCTCTATTC ATCACAACCA TCCTCAACCC AACAAGTGGA 
    GAATCAGTAG GTGTATGCTA TGGAATGATG GGGAACAACC TTCCTTCTCA 
    ATCAGACACA ATCGCTCTCT TTAGACAAAA CAACATCCGA CGTGTTAGAC 
    TCTACGATCC AAACCAAGCC GCTTTAAACG CTCTTAGAAA CACGGGTATC 
    GAAGTCATCA TCGGCGTTCC AAACACCGAT CTTCGTTCAC TCACTAACCC 
    TTCTTCCGCT AGATCATGGC TCCAAAACAA CGTCCTCAAC TATTACCCCG 
    CCGTTAGCTT CAAGTACATC GCCGTAGGTA ACGAAGTATC TCCGTCGAAC 
    GGCGGTGATG TTGTGCTCCC TGCCATGCGT AACGTTTACG ATGCTCTAAG 
    AGGTGCAAAT CTTCAAGATC GTATTAAAGT TTCTACCGCC ATTGATATGA 
    CTTTGATTGG AAACTCTTTC CCTCCTTCCT CCGGAGAGTT TCGTGGTGAC 
    GTTAGATGGT ATATCGATCC CGTCATCGGG TTTCTTACGA GTACGAACTC 
    AGCGTTACTA GCCAACATCT ATCCTTACTT CAGCTACGTT GACAATCCAC 
    GTGACATATC TCTCTCTTAC GCTCTCTTCA CTTCTCCTTC CGTCGTCGTA 
    TGGGACGGCT CTCGTGGCTA CCAAAACCTC TTTGACGCTT TACTTGACGT 
    TGTTTACTCT GCCGTTGAAC GCTCAGGCGG TGGATCTCTC CCAGTGGTTG 
    TTTCCGAGAG CGGATGGCCT TCTAACGGTG GAAACGCCGC GAGTTTCGAT 
    AACGCGCGAG CTTTTTACAC GAATCTTGCG TCGCGTGTGA GAGAGAACAG 
    AGGAACACCG AAGAGACCTG GAAGAGGAGT GGAAACGTAT TTGTTCGCTA 
    TGTTTGATGA GAATCAAAAG AGTCCTGAGA TCGAGAAGAA TTTTGGTTTG 
    TTTTTTCCTA ATAAACAACC AAAATTTCCG ATCACATTCT CTGCCGCGAG 
    AGACGGTACG GCGGTTGAGT GATGATTTTA TATGCTGAGA TTTATGTGAA 
    TAATTGGGAG ATTATCCCAT AAAAGGTTCC AAATAAAGAC AAATTTCAAA 
    TAAAACCTGT TAGTCCAAGT TAAATTAAGT

    Gene models with high sequence identity

    1. AT4G16260.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, family 17 0
    Gene3D Glycoside hydrolase, subgroup, catalytic core 5.2e-120
    HMMPfam Glycoside hydrolase, family 17 8e-131
    superfamily Glycoside hydrolase, catalytic core 1.8e-113

    See the detailed result >

    AT4G16260.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR