F02508

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02508

Determination of introduced cDNA(s)

  • RAFL09-33-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-D24 - Resource: pda05990

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-33-D24 - full reading 
    GTTATTATTC CTCCATTTAT TCATCTCAAA ACCCATATCT CTCTGTCTTG 
    ATCTCTCTCT CACTTTCTAA TAAGATCAAA GAAGATGTCG AAAGCTACCA 
    TAGAACTCGA TTTCCTCGGA CTTGAGAAGA AACAAACCAA CAACGCTCCT 
    AAGCCTAAGT TCCAGAAATT TCTCGATCGC CGTCGTAGTT TCCGAGATAT 
    TCAAGGTGCG ATTTCGAAAA TCGATCCGGA GATTATCAAA TCGCTGTTAG 
    CTTCCACTGG AAACAATTCC GATTCATCGG CTAAATCTCG TTCGGTTCCG 
    TCTACTCCGA GGGAAGATCA GCCTCAGATC CCGATTTCTC CGGTCCACGC 
    GTCTCTCGCC AGGTCTAGTA CCGAACTCGT TTCGGGAACT GTTCCTATGA 
    CGATTTTCTA CAATGGAAGT GTTTCAGTTT TCCAAGTGTC TCGTAACAAA 
    GCTGGTGAAA TTATGAAGGT CGCTAATGAA GCAGCATCTA AGAAAGACGA 
    GTCGTCGATG GAGACAGATC TTTCGGTAAT TCTTCCGACC ACTCTAAGAC 
    CAAAGCTCTT TGGCCAGAAT CTAGAAGGAG ATCTTCCCAT CGCAAGGAGA 
    AAGTCACTGC AACGTTTTCT CGAGAAGCGC AAGGAGAGAT TAGTATCAAC 
    ATCTCCTTAC TATCCGACAT CGGCCTAAAC GATCTCTTTT TAGATTGGGA 
    CATGGACCAA ATTTGTCTTT TTCAATCGGA AGACATCCAT GTTCGTTTTT 
    GGATTTGGCT TATTTCCAAT CTTCTTTTGA AGCCTTCTTC GTCGTTGCTA 
    AATCGTATAC TATTCACGAC AAACGTTTTT AGGAGATTAC GTTACCTACT 
    AAGATTATAT ATATTGGTTT GTTTTTAAAA ATGTCTATTA TCTTTATTGT 
    CATTGATAGC TTGATTTAAG AAGCTCTCTC TTATCCCGTG ACCTTCTACT 
    TTTGTTTTAT TTTTTAGTAT ATGGTAAAGA AAATTATAAC

    Gene models with high sequence identity

    1. AT5G13220.1 [+] show detail - jasmonate-zim-domain protein 10
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam CCT domain-like 0.0000000000000088
    HMMPfam Tify 0.0000000000039
    ProfileScan Tify 12.138

    See the detailed result >

    AT5G13220.1

    Model type
    Protein coding
    Short Description
    jasmonate-zim-domain protein 10
    Curator Summary
    Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.
    Computational Description
    jasmonate-zim-domain protein 10 (JAZ10); FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus, regulation of systemic acquired resistance, response to wounding; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 12 (TAIR:AT5G20900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR