F02535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02535

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02535

Determination of introduced cDNA(s)

  • RAFL19-54-K12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-54-K12 - Resource: pda11264

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-54-K12 - full reading 
    CTCGCTGAGC AGCTGCGAAT CTCACGACTT CAAGATGCCG TCGCACAAGT 
    CGTTTATGAT TAAGAAGAAG TTGGGAAAGA AGATGAGACA GAACAGGCCT 
    ATTCCTCACT GGATTCGTCT TCGTACCGAC AACACCATCA GGTACAATGC 
    CAAGCGCAGG CACTGGCGTA GAACCAAGCT CGGATTCTAA GTGATAAGCC 
    TTCTAAAAGA GTCTTCTTTA TCTGTTTGGT TTAGCATTTC CTCAAGTCTT 
    CTTTTTGTTT TAAGTTATGA CATTTTCATA TTTCTGTAAG ACTTTTACTC 
    TATTATGATT CATGTTACCT

    Gene models with high sequence identity

    1. AT4G31985.1 [+] show detail - Ribosomal protein L39 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L39e, conserved site 0
    superfamily Ribosomal protein L39e 3.2e-19
    BlastProDom Q541X1_ARATH_Q541X1; 4e-15
    Gene3D Ribosomal protein L39e 1e-09
    HMMPanther Ribosomal protein L39e 4.7e-32
    HMMPfam Ribosomal protein L39e 1.1e-22

    See the detailed result >

    AT4G31985.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L39 family protein
    Computational Description
    Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT3G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR