F02536

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02536

Determination of introduced cDNA(s)

  • RAFL09-24-H23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-24-H23 - Resource: pda08067

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-24-H23 - full reading 
    ACTGCATTAA AAAAACACTG ACGTGTAAAT TTTATTTATC CCAATACCGT 
    TTACCTTTAG TCAACGATTT TTTTCCCACC AAAGTCCCCA AATACACTCG 
    TTTGCGTTTA AACCTTTCAC TTGAAACTCT GTTTTAGACT CTTTTATTTG 
    TTAGACTTTT TTGTTTGTTT CGTCGTTGTT GTTTTTTGAC CAAACCACCA 
    TGCGATTCGT CGCGCCACCG CCTCGTTCCG GCGATAACTC ACCGTCACCT 
    TCACCATCTT CCGGTATATC CGAAGAGATT CTCTCCCGTT CTTCGGATCC 
    TCCTTTAGAG TTTAGTCCTC CATTGATCGC CATGGTGGTG GTTCTAGCCG 
    CCGCTTTTCT ATTCGTAACT TACTCTCGTC TCATCTCCCG CCGTTTTCTT 
    TCACCTCTAT TCCGTCGTTT TAGAAGGTGG CGATGCCGTC GACGCCGTCT 
    CCTTCACTTA TCTTCAGCTT CCTCTGCTTC AACTTCATCC TCCGATCTCC 
    GATCATTTTC ACCTTTCCCT TTCGACTCTT TTCATTACTC TTCTTACTCA 
    CCTTACGGAT TAGACGATTC CGTTATCAAA ACTTTACCGC TGTTTCTCTA 
    CTCCGCCGCT GCTTGCACCG GAAAACCCGC GGTGGGGAAA ACCTCCGCCG 
    CCAATTGCAG AGATTGTGCT GTTTGTTTGT TGGAATTCGA AGAAGGTGAT 
    TATGTACGAA CACTTCCGTT ATGCTTCCAT GCTTTTCACC TTGAATGCAT 
    CGATGAATGG CTCCGATCTC ACCCTAACTG TCCGTTATGC CGTACGGCGA 
    TTCTCGGATC CGCCGGAGTT TTAACGCCTA TGTCGCCGTT CGTTCCGTTA 
    ATGGCTCCTC GAATTCGTCC GAGTCTCGAT GATGAAGAGA ATAACGCGAT 
    CATCATCCGC GGCGAAATCA CACCGTCGCG GAGCAATTGG AACACAATCG 
    CTGCCGATAC GACGAACGAT CAGGAGATCA GAGCGTCGGT GGAAGAGCAA 
    TCATCACCGG CGATTTCTCG GTTCCGGGAG CTGAAGAGAT CGTACTCGTT 
    CGAATGCGAG AGAGAATCTG AATCAGAGAG AGTAACGATG GAGCCAGCGA 
    CGGTGTCTCC ATGGAGATAC CGGAGATCTA CATGGAACAA ACGTCAATCA 
    CCGTTCGGAA ACCTAATATC GAAATCAAGA GTGTTCTCGT TCCGTTACTA 
    CAGAAGCACG AAATCACCGT TCTTCCGACG GAGATCATCG GCGGGAGTGT 
    TTTACCCGAT ATCAGAACGG ATTCCAGCGA CGGGAAGCTC ATCGCGGCGA 
    ACGAAATCGA TGACGAGTCC GATGTTCTTC AGAACAGCAC CGCACTCATC 
    GAGCCGGTTA AGATGCGGAG ATCCAGAGGC ACTGTTATCG CCGGAGAGAT 
    GGAGAAGAAG AGACACGTGT AGGGCAGAGA TGTAAGATGA AATTTGGACG 
    GTGGTGATGA TAAAAAGAAA TATTGAAGTG GAAGGAGAGC A

    Gene models with high sequence identity

    1. AT3G18930.2 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 5.5e-15
    ProfileScan Zinc finger, RING-type 12.179
    HMMSmart Zinc finger, RING-type 5.3e-06
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 6.3e-16
    HMMPfam Zinc finger, C3HC4 RING-type 2e-06
    Gene3D no description 5.7e-14

    See the detailed result >

    AT3G18930.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G03550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR