F02635

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
T2 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02635

Determination of introduced cDNA(s)

  • RAFL06-77-M12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-77-M12 - Resource: pda03692

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-77-M12 - full reading
    AATCAGTCTA ACGATGGGTT CAAAGAATAA GAAGCAAAGG AAAGGAGAGA 
    GCATTGAAGA AGCTAAAGGA TCCAGTGGAG TCGCAGAGGA AGGAAACGAA
    ATGATTAAGG ATCCAAGGTT TTCGTCGGCG CACACGGACC CTAAATTCCG
    TAGGATGCGG AGGCGTGACT CCAAAGTCGC CATTGACTCC AGATTCCAGC
    CTATGTTCAA TGATAAGCGA TTTGCCACTG GTTCTGCTCC TGTCGATAAG
    CGTGGCAAGC GTAGAACAGG AGGCACTGGC AAAGATTCGC TTCGAGAGTT
    TTATCGAATT GAAGATGAAG GTAAGCAGAA AACTGAGGAG GAATCTGGGG
    ATGAGAGCGG GAGTGAGACA GAGATAAATG ATTTGAAATC CGAAAAATCT
    AGCCATGTAG AATCTGAGGA AGAGAGTGAG AGTGAGCTAA AGGTTGCTTC
    TTTGGATGAT GAATCTGATG AGAAAGCAGA CTCTGAAGAG TTATCCTCGC
    AGGAGGAGGA AGAAGAAGAG GATGATACAG ATGAGGACGA TGAAGCTATG
    TATGAAGATG AGGGACCAGA AATTCCGGAA GAGAACATAC CGCTTATCCA
    AGAAGAAACT CATAGACTGG CTATCGTTAA CATGGATTGG AGACATGTCT
    CTGCTAAAGA CTTGTACGTA GTGTTGAATT CGTTTCTGCC AAAAGATGGG
    CGCATTTTGT CAGTTGCGGT CTATCCATCT GAGTTCGGAC TTGAGCGAAT
    GAAAGAGGAG GAAATCCATG GGCCGGTAAT TGATGGCGAC AAAAAGAATG
    ACGCTAGTGA TGATGAAGAT GAAGAAGAGG AGGAAGATGA GGATGTCATC
    AACCAGAAGC TACGTGCCTA TGAAATAAGT AGATTAAAAT TACTTGTACA
    AATCATGTGA TGGAATTGAG TTTGAGAGAT CATCAAACAA GCTCGACCTA
    AGATTTATTC CGGATTCCAT GGAATTCAAA CATCCACCTC GTGATATTGC
    ATCTGAGGCA CCAGCTGGTT ATGAAGGTTT AGATTTTCAG AGCCGAGCTC
    TGCAGATGAG CAAAGTTAAT CTTTCTTGGG ATGAAGATGA ACCGCACCGG
    ATTAAGACCT TAAATCAGAA ATTCAATCCT GAACAGTTGG CAAATCTTGA
    GATGAAGGAG TTTTTAGCTT CTGATGAGAG TGATTCTGAT GAGGAAGACG
    ACTTGGGCAA TGAAGTTATT AACCAGAGTA AAAAAAAAGG ACAAGAAGAA
    AGATAAGTAC CGAGCTTTAA TAGAAGCCGA AGATGTTGAT TCTGATAAAG
    ACCTGGAGGA GGAGAATGAC CAGGATATGG AGGTAACATT CAATACCGGT
    TTAGAAGATC TTAGCAAAGA GATTCTTAAA AAGAAAGACA ACCAGTCAGA
    ATCGGTGTGG GAAACATATC TAAGGCAGAG ACGCGAGAAG AAGAGAGCCA
    GGAAGAATAA ACAGAAGGAT GATGATTCTT CTCCGGATGA TGACGACGAT
    TATAACATTG ATAGAAAGGC AGTGAAAGAT GATGGAGATG ACGATTTCTT
    TATGGAGGAA CCTCCTCTTA AGAAGAAGAA GAAAGAAGGA AAGACAAAGA
    AGGAGGAAGT AGCAGCGGAA GAAAAAAGTA GAGCGGAGCT TGAGTTGTTA
    CTAGCTGATG AGAATGCAGG AGATGGTAAT GGTCTGAAAG GGTATAATAT
    TAAACGGAAA GCTAAAAAAG GAAAGACTGA TATTTCGGAA GACAAGATAC
    CTGCTGCTGA ACTTGATGAT CCGAGATTCT CAGCTCTATT CTCGTCTCCT
    TACTATGCCC TAGACCCTAC GGATCCACAG TTTAAAAGGA GTGCGACTTA
    TGCAAGGCAA TTAGCTTTGA AGCAAAAGGA AGATCCAAAA GGCCACGAGG
    ATGTGAAAGC GCCAAAGGAG AAACAGGAGT TGAATTCAGA TGGTAACTTG
    GGGTCTAAGA AGGAGAGACA CGAACTGACT TCTACTGTCA AATCTTTGAA
    GATGAAGATG ATGAACAAGG ATTCTGAGAA GAAAAAAGCG GGAAATCCAG
    CGTCTTCATC GACTTTGGCT CAGCGAATTA AGAAGAAAGC CAAAGATTTA
    TCCAAGAAAT AATAATGTCT TTGTTTCCTT CTTCAAATCA ATTTTGTTTT
    AAATTTAAAA TTCTGAATTA ATAACAATTT CAACCTATAT TGTACCCTTT
    CAAATCTGTT TATGTTTCAT TTTGAGC

    Gene models with high sequence identity

    1. AT3G01160.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NUC153 1.1e-09
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 1.5e-36
    HMMPanther UNCHARACTERIZED 5.6e-95
    HMMPanther UNCHARACTERIZED 1.7e-37

    See the detailed result >

    AT3G01160.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR