F02635

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
T2 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02635

Determination of introduced cDNA(s)

  • RAFL06-77-M12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-77-M12 - Resource: pda03692

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-77-M12 - full reading 
    AATCAGTCTA ACGATGGGTT CAAAGAATAA GAAGCAAAGG AAAGGAGAGA 
    GCATTGAAGA AGCTAAAGGA TCCAGTGGAG TCGCAGAGGA AGGAAACGAA 
    ATGATTAAGG ATCCAAGGTT TTCGTCGGCG CACACGGACC CTAAATTCCG 
    TAGGATGCGG AGGCGTGACT CCAAAGTCGC CATTGACTCC AGATTCCAGC 
    CTATGTTCAA TGATAAGCGA TTTGCCACTG GTTCTGCTCC TGTCGATAAG 
    CGTGGCAAGC GTAGAACAGG AGGCACTGGC AAAGATTCGC TTCGAGAGTT 
    TTATCGAATT GAAGATGAAG GTAAGCAGAA AACTGAGGAG GAATCTGGGG 
    ATGAGAGCGG GAGTGAGACA GAGATAAATG ATTTGAAATC CGAAAAATCT 
    AGCCATGTAG AATCTGAGGA AGAGAGTGAG AGTGAGCTAA AGGTTGCTTC 
    TTTGGATGAT GAATCTGATG AGAAAGCAGA CTCTGAAGAG TTATCCTCGC 
    AGGAGGAGGA AGAAGAAGAG GATGATACAG ATGAGGACGA TGAAGCTATG 
    TATGAAGATG AGGGACCAGA AATTCCGGAA GAGAACATAC CGCTTATCCA 
    AGAAGAAACT CATAGACTGG CTATCGTTAA CATGGATTGG AGACATGTCT 
    CTGCTAAAGA CTTGTACGTA GTGTTGAATT CGTTTCTGCC AAAAGATGGG 
    CGCATTTTGT CAGTTGCGGT CTATCCATCT GAGTTCGGAC TTGAGCGAAT 
    GAAAGAGGAG GAAATCCATG GGCCGGTAAT TGATGGCGAC AAAAAGAATG 
    ACGCTAGTGA TGATGAAGAT GAAGAAGAGG AGGAAGATGA GGATGTCATC 
    AACCAGAAGC TACGTGCCTA TGAAATAAGT AGATTAAAAT TACTTGTACA 
    AATCATGTGA TGGAATTGAG TTTGAGAGAT CATCAAACAA GCTCGACCTA 
    AGATTTATTC CGGATTCCAT GGAATTCAAA CATCCACCTC GTGATATTGC 
    ATCTGAGGCA CCAGCTGGTT ATGAAGGTTT AGATTTTCAG AGCCGAGCTC 
    TGCAGATGAG CAAAGTTAAT CTTTCTTGGG ATGAAGATGA ACCGCACCGG 
    ATTAAGACCT TAAATCAGAA ATTCAATCCT GAACAGTTGG CAAATCTTGA 
    GATGAAGGAG TTTTTAGCTT CTGATGAGAG TGATTCTGAT GAGGAAGACG 
    ACTTGGGCAA TGAAGTTATT AACCAGAGTA AAAAAAAAGG ACAAGAAGAA 
    AGATAAGTAC CGAGCTTTAA TAGAAGCCGA AGATGTTGAT TCTGATAAAG 
    ACCTGGAGGA GGAGAATGAC CAGGATATGG AGGTAACATT CAATACCGGT 
    TTAGAAGATC TTAGCAAAGA GATTCTTAAA AAGAAAGACA ACCAGTCAGA 
    ATCGGTGTGG GAAACATATC TAAGGCAGAG ACGCGAGAAG AAGAGAGCCA 
    GGAAGAATAA ACAGAAGGAT GATGATTCTT CTCCGGATGA TGACGACGAT 
    TATAACATTG ATAGAAAGGC AGTGAAAGAT GATGGAGATG ACGATTTCTT 
    TATGGAGGAA CCTCCTCTTA AGAAGAAGAA GAAAGAAGGA AAGACAAAGA 
    AGGAGGAAGT AGCAGCGGAA GAAAAAAGTA GAGCGGAGCT TGAGTTGTTA 
    CTAGCTGATG AGAATGCAGG AGATGGTAAT GGTCTGAAAG GGTATAATAT 
    TAAACGGAAA GCTAAAAAAG GAAAGACTGA TATTTCGGAA GACAAGATAC 
    CTGCTGCTGA ACTTGATGAT CCGAGATTCT CAGCTCTATT CTCGTCTCCT 
    TACTATGCCC TAGACCCTAC GGATCCACAG TTTAAAAGGA GTGCGACTTA 
    TGCAAGGCAA TTAGCTTTGA AGCAAAAGGA AGATCCAAAA GGCCACGAGG 
    ATGTGAAAGC GCCAAAGGAG AAACAGGAGT TGAATTCAGA TGGTAACTTG 
    GGGTCTAAGA AGGAGAGACA CGAACTGACT TCTACTGTCA AATCTTTGAA 
    GATGAAGATG ATGAACAAGG ATTCTGAGAA GAAAAAAGCG GGAAATCCAG 
    CGTCTTCATC GACTTTGGCT CAGCGAATTA AGAAGAAAGC CAAAGATTTA 
    TCCAAGAAAT AATAATGTCT TTGTTTCCTT CTTCAAATCA ATTTTGTTTT 
    AAATTTAAAA TTCTGAATTA ATAACAATTT CAACCTATAT TGTACCCTTT 
    CAAATCTGTT TATGTTTCAT TTTGAGC

    Gene models with high sequence identity

    1. AT3G01160.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NUC153 1.1e-09
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 1.5e-36
    HMMPanther UNCHARACTERIZED 5.6e-95
    HMMPanther UNCHARACTERIZED 1.7e-37

    See the detailed result >

    AT3G01160.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR