F02638

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02638

Determination of introduced cDNA(s)

  • RAFL09-73-B09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-73-B09 - Resource: pda17821

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-73-B09 - full reading 
    GATTTGTGCC TACTCATTTC CTCCAAACGT CAAACATAGC AGCAGCCATG 
    GCTGCCACCA ACACAATCCT CGCATTCTCA TCTCCTTCTC GTCTTCTCAT 
    TCCTCCTTCC TCCAATCCTT CAACTCTCCG TTCCTCTTTC CGCGGCGTCT 
    CTCTCAACAA CAACAATCTC CACCGTCTCC AATCTGTTTC CTTCGCCGTT 
    AAAGCTCCGT CGAAAGCGTT GACAGTTGTT TCCGCGGCGA AGAAGGCTGT 
    TGCAGTGCTT AAAGGTACTT CTGATGTCGA AGGAGTTGTT ACTTTGACCC 
    AAGATGACTC AGGTCCTACA ACTGTGAATG TTCGTATCAC TGGTCTCACT 
    CCAGGGCCTC ATGGATTTCA TCTCCATGAG TTTGGTGATA CAACTAATGG 
    ATGTATCTCA ACAGGACCAC ATTTCAACCC TAACAACATG ACACACGGAG 
    CTCCAGAAGA TGAGTGCCGT CATGCGGGTG ACCTGGGAAA CATAAATGCC 
    AATGCCGATG GCGTGGCAGA AACAACAATA GTGGACAATC AGATTCCTCT 
    GACTGGTCCT AATTCTGTTG TTGGAAGAGC CTTTGTGGTT CACGAGCTTA 
    AGGATGACCT CGGAAAGGGT GGCCATGAGC TTAGTCTGAC CACTGGAAAC 
    GCAGGCGGGA GATTGGCATG TGGTGTGATT GGCTTGACGC CGCTCTAAGT 
    CAGAGGCTAA GCAAGTACTC TTATGTCTAC TGTGTTGATC TTGTCTGTTT 
    GAACAGATGT AAGAATCTTA GCAAATAATG TTTGGCTTAA TAAACTTTGA 
    TGTTTATGTT CATTGCATCA ATTTTTCTCT TTTTGAATTT GTGACAGTGA 
    TGTGTTTACT TTTGATACAA CTTTGTGTTT GATCGTTTAA GTACATTTTG 
    GTTTATTTAG CATAAAAAAA A

    Gene models with high sequence identity

    1. AT2G28190.1 [+] show detail - copper/zinc superoxide dismutase 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Superoxide dismutase, copper/zinc binding 4.2e-49
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
    HMMPanther SUPEROXIDE DISMUTASE [CU-ZN] 2.3e-75
    HMMPanther Superoxide dismutase, copper/zinc binding 2.3e-75
    PatternScan Superoxide dismutase, copper/zinc, binding site 0
    PatternScan Superoxide dismutase, copper/zinc, binding site 0
    superfamily Superoxide dismutase, copper/zinc binding 1.3e-58
    Gene3D Superoxide dismutase, copper/zinc binding 2.5e-56

    See the detailed result >

    AT2G28190.1

    Model type
    Protein coding
    Short Description
    copper/zinc superoxide dismutase 2
    Curator Summary
    Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.
    Computational Description
    copper/zinc superoxide dismutase 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 4720 Blast hits to 4704 proteins in 1488 species: Archae - 6; Bacteria - 1989; Metazoa - 1257; Fungi - 323; Plants - 669; Viruses - 141; Other Eukaryotes - 335 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR