F02720

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F02720

Determination of introduced cDNA(s)

  • RAFL08-12-B15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-B15 - Resource: pda04698

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-12-B15 - full reading 
    CCCTCTTTGC TCTCACTATC AAAACTCTGA ATTTCGATTT CAATGGAGTC 
    ACGCGTGCTG TTACGCGCCA CCGCGAATGT CGTTGGAATT CCGAAATTGA 
    GACGACCAAT CGGAGCGATC CACCGTCAAT TCAGCACTGC ATCGTCTTCC 
    TCGTTCTCGG TTAAACCAAT CGGAGGAATC GGAGAGGGAG CGAATCTGAT 
    CTCCGGTCGT CAGCTTCGTC CAATTCTTCT TCTCGATTCG TCGGCGATCA 
    ACGGAGGAGA GAAAAGAGAA ATTCTCAAAC CGGTTAAAGC CGCCGCTGCT 
    GAAGGTGGAG ATACCGCTGG GGATGCTAAA GTTGGATTCC TCGCCAAGTA 
    TCCATGGCTA GTCACTGGAT TCTTCTTCTT CATGTGGTAC TTCTTGAATG 
    TGATTTTCAA CATCCTTAAC AAGAAGATCT ATAATTACTT CCCTTATCCC 
    TATTTTGTAT CGGTGATACA CTTGTTCGTG GGAGTTGTTT ACTGCTTGAT 
    CAGCTGGTCC GTGGGTCTTC CTAAACGTGC CCCGATTGAC TCGAACCTCC 
    TCAAGGTATT GATACCAGTC GCAGTCTGTC ACGCCTTAGG CCATGTCACT 
    AGCAATGTCT CTTTCGCTGC GGTTGCTGTC TCCTTCACTC ACACCATCAA 
    AGCACTTGAG CCATTCTTCA ATGCGGCTGC TTCTCAATTC ATTATGGGAC 
    AATCCATCCC CATAACACTA TGGTTGTCTC TAGCTCCTGT TGTTCTTGGT 
    GTTGCAATGG CTTCACTAAC TGAGCTATCA TTCAACTGGC TCGGTTTCAT 
    CAGTGCTATG ATATCAAACA TTTCTTTCAC TTACCGAAGC ATCTTCTCCA 
    AGAAAGCCAT GACTGATATG GACAGTACAA ATGTCTACGC TTACATCTCC 
    ATCATCGCAC TCTTCGTCTG CATTCCTCCT GCCATCATCG TTGAAGGTCC 
    TAAACTACTT AACCATGGTT TCGCCGACGC GATTGCTAAA GTTGGAATGA 
    CTAAATTCAT CTCTGATCTC TTCTGGGTTG GAATGTTTTA CCATCTCTAC 
    AATCAGCTGG CTACCAATAC CTTGGAGAGG GTTGCACCGC TGACTCACGC 
    GGTTGGAAAC GTTCTGAAAC GTGTGTTCGT GATCGGTTTC TCCATCGTTA 
    TCTTCGGAAA CAAGATATCG ACACAGACAG GTATAGGAAC AGGAATAGCC 
    ATTGCTGGAG TTGCAATGTA CTCTATCATT AAGGCCAAGA TCGAAGAAGA 
    GAAACGGCAA GGAAAGAAAG CATAGAAAGC AGCTGAAGAC GGCGGTCGAC 
    AGTTGCATAA ACAAGTTCTC CGATGGATAT ATATATATCT ATATAATAAA 
    TAACCAAATG CAATAGTATG TTGTATTGTA CCATCAACCA TTGTTTTCGA 
    GTTTTTCCTT TCTTTGTTTT TTTTTTTTGC TTTCTGAAAA GTTATATATA 
    AATTTTTTAT TCTGCTTCTT CTCTTTTTAA TGGAGAACAT TTTCATTTCC 
    ATTTCTTCTG ATATGCAATT ATCTTAACGG ATAAAAGGCA TAATAATGTA 
    TTTATTTGCT CTTTCTCTTG GAGCATATAC CCACAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT5G46110.1 [+] show detail - Glucose-6-phosphate/phosphate translocator-related
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Tpt phosphate/phosphoenolpyruvate translocator 5e-188
    HMMPanther SOLUTE CARRIER FAMILY 35 2.7e-114
    superfamily Multidrug resistance efflux transporter EmrE 1.6e-05
    superfamily Multidrug resistance efflux transporter EmrE 2e-05
    HMMPfam Protein of unknown function DUF250 1.6e-34

    See the detailed result >

    AT5G46110.1

    Model type
    Protein coding
    Short Description
    Glucose-6-phosphate/phosphate translocator-related
    Curator Summary
    mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator
    Computational Description
    ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2548 Blast hits to 2546 proteins in 418 species: Archae - 2; Bacteria - 319; Metazoa - 501; Fungi - 418; Plants - 1031; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR