F02737

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02737

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02737

Determination of introduced cDNA(s)

  • RAFL06-08-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-D11 - Resource: pda02875

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-D11 - full reading 
    AAATCACTAA TCATCGATTC TTCTCCGTTG GATCAAAGAC AATAAAACAT 
    CTGAAGGTAT TGTATCCGAA GAAACTCCCA TGGATGCTTC TCAGGAGCAA 
    CAACATGAAA CAGTTGAGGA GATGCTTGCT CGCCACAGGC AAGAGATTAA 
    ACAACTTCAA AACAAAGAGA CAGAGATGAA GAAGGCAGCT GCCAAAGGTA 
    GCAAAGCTGA ACAAAAAGCT AAGAAGAAGC AAGTCGAAGA TGACATTTCC 
    AAACTCTCCA CTAAGCTCAA GGACAAACAG TTGAAAGAAC TCGCCTCTCA 
    AGGTTTCAGC AGCAGCAGCA GCAACAACAT TGCCAAGGAC GAAACGACTG 
    AGAAAAAAGG AGACATCGAC ACTCTAGTTA GAGCTATAGC TGGAGTCTCA 
    GTCACTGCTC AGCAAGAGCA CTCAAAGCCT AGCAAGAGCG TGAAGAGGCG 
    CGAGAAACGG GCTAAGGAAG AAGCAGACAG AGAGCAGAGA ATTAAAGAGG 
    AGCAAAGCCA CGTGAAAAGT GATCGTATGG TTGAGAACGC CAAGCTTGAG 
    AAGAAGCTTA AACCATTGGG ATTAACAGTC AGTGAGATTA AACCAGACGG 
    ACATTGCCTT TACCGTGCTG TTGAGAATCA GCTTGCCAAC CGCTCGGGCG 
    GTGCATCTCC TTACACATAC CAGAATCTAA GAGAAATGGC TGCTTCGTAC 
    ATGAGAGAGC ACAAAACCGA CTTTCTCCCG TTTTTCTTGT CAGAGACTGA 
    GGGTGACTCC AACAGTGGAT CTGCAGAAGA GCGGTTTGAG AAATACTGCA 
    GAGAAGTCGA GTCAACCGCT GCTTGGGGCA GTCAATTGGA GCTTGGAGCA 
    TTAACACATT GCTTGAGGAA ACACATAAAG GTGTATTCGG GATCGTTTCC 
    GGATGTTGAG ATGGGCAAAG AGTATAGATC CGGCGATGAC TCGAGCCTCA 
    TGTTATCGTA TCACAGGCAT GCTTTTGGGC TCGGGGAGCA TTATAACTCA 
    GTGGTGCTCG TCAACAACAT CACCGGATGA TGGATGATGG ACTTTATCTA 
    AAGCTTTAAG AAAAGTGCTT TTGTATCAAA AGTTTACTGA AATTCTTTCT 
    TCTTTAATGT TTGTTGGATT TGAGAGAACC AATGTGTAAC TTCAATTTTT 
    CATTTGGTTA CAAGGCGAAG CATAATCTAT TGCTAC

    Gene models with high sequence identity

    1. AT3G62940.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ovarian tumour, otubain 27.157
    HMMPfam Ovarian tumour, otubain 2.5e-26
    HMMPanther OTU DOMAIN CONTAINING PROTEIN 8.7e-49
    superfamily Cysteine proteinases 5.8e-33
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT3G62940.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1); Has 4424 Blast hits to 3467 proteins in 474 species: Archae - 10; Bacteria - 494; Metazoa - 1270; Fungi - 452; Plants - 292; Viruses - 20; Other Eukaryotes - 1886 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR