F02743

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02743

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02743

Determination of introduced cDNA(s)

  • RAFL04-15-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-F19 - Resource: pda00433

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-F19 - full reading 
    AACTTCTAGA AAAATCGCCA GAAGTGACGA AATTGAAAAT CTCAGATTTC 
    TCTTAATCGG CGACGGAGTA ACGAAACAAG GAGAAGAAGA AGAAGAAGAA 
    AATGACGACT CGAATCGCTC CTGGTGTTGG AGCTAATCTT CTCGGCCAAC 
    ACTCCGCTGA GAGGAACCAA GACGCCACTG TTTACGTCGG TGGTCTCGAT 
    GCTCAGCTTT CTGAAGAATT GCTTTGGGAA TTGTTCGTTC AAGCTGGACC 
    TGTTGTTAAT GTCTATGTAC CGAAAGATAG AGTGACAAAT CTTCATCAGA 
    ACTATGGATT CATTGAATAT CGTAGTGAGG AAGATGCTGA TTATGCGATT 
    AAGGTTCTTA ACATGATTAA GCTCCACGGG AAGCCTATGC GTGTTAACAA 
    GGCATCTCAA GATAAGAAGA GCCTGGATGT TGGTGCTAAC CTTTTCATTG 
    GAAACCTTGA CCCTGATGTG GATGAGAAGC TCTTGTATGA TACTTTCAGT 
    GCATTTGGTG TGATTGCTTC TAATCCTAAG ATAATGAGAG ATCCCGATAC 
    TGGAAACTCA CGAGGTTTTG GTTTCATCAG CTATGACTCC TTTGAAGCAT 
    CTGATGCTGC TATTGAGTCA ATGACTGGAC AATATCTCAG TAATCGTCAA 
    ATCACAGTCT CTTACGCATA CAAGAAAGAC ACCAAAGGAG AGCGCCATGG 
    TACTCCAGCA GAGAGGCTTT TGGCAGCCAC AAATCCAACT GCCCAGAAAA 
    GCAGACCCCA TACGCTATTC GCAATGGGCC CTCCATCCAG TGCTCCTCAA 
    GTTAATGGTC TACCACGTCC GTTTGCTAAC GGCAGCATGC AACCTGTCCC 
    GATTCCCGCT CCCCGTCAAC CACCACCACC TCCTCCACAA GTATATCAAA 
    CTCAGCCACC ATCCTGGCCA TCTCAGCCAC AACAACACAG CATGGTCCCA 
    CCACCCATGC AATTCCGTCC ACCTCAGGGT ATGCCTCCGC CACCACCTCC 
    TCAGTTTCTA AATCACCAAC AAGGTTTCGG TGGTCCGAGG CCGCCGCCAC 
    CACCTCAAGC CATGGGAATG CACCAACATG GAGGATGGCC ACCGCAACAC 
    ATGCAGCAGC AAGGTGGACC ACCACAACAA CAACAACCAC CATACCAACA 
    CCATCACATG TCTATGCCTC CACCACCACC ACACCAAGGT TGATAATAAT 
    CATCGCCTCA GTTTCGGACC AATTCAACTA TATGTAAACC CTTTCTTTAC 
    TGGCAAGTAA TCCCGAGGAT TTTCCGTTTT AGATTCAATG AAACCTAATA 
    GGGAGAGAGA GAAAGAGAAA GAGAGAGGGT GAGAGAGAGA TCACAATTAA 
    TATTCTATAT TGTCTTGTCT GCAGAGAATC TCTTATCTTC GGTTTAGAGA 
    GAGAGAGAGC GTAGAAATTA GTGCCAATGT GTGTCTGGTT TTTAGTGATG 
    TTATTTCTTG TTTGTGTTGC AGAATCTCTG ATGCCGTGTG CTTTAATATT 
    TACCAAAACT GTGCTGAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT2G18510.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 3.7e-23
    HMMSmart RNA recognition motif, RNP-1 4.1e-23
    Gene3D Nucleotide-binding, alpha-beta plait 1.2e-23
    Gene3D Nucleotide-binding, alpha-beta plait 1.9e-23
    HMMPfam RNA recognition motif, RNP-1 6.5e-17
    HMMPfam RNA recognition motif, RNP-1 3.4e-19
    superfamily RNA-binding domain, RBD 2.1e-23
    superfamily RNA-binding domain, RBD 6.8e-23
    HMMPanther SPLICEOSOME ASSOCIATED PROTEIN 8.5e-148
    HMMPanther RNA-BINDING PROTEIN 8.5e-148
    ProfileScan RNA recognition motif, RNP-1 17.421
    ProfileScan RNA recognition motif, RNP-1 17.216

    See the detailed result >

    AT2G18510.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 66829 Blast hits to 41224 proteins in 1633 species: Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi - 10282; Plants - 12025; Viruses - 917; Other Eukaryotes - 7701 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR