F02809

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02809

Determination of introduced cDNA(s)

  • RAFL21-10-I04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-10-I04 - Resource: pda11791

    full reading [+] show sequence

    Nucleotide sequence: RAFL21-10-I04 - full reading 
    TGCAGAGACG CCTCCTTCTC TCGCCTCCGT GTCTCTCCAA TGCTCTCTCG 
    TGTCTGCCCA ACCCTCCGCT ATAATCGTAT CTGGTCTGCT CATGCGCGTG 
    AAATGCCACG CGCCACCCTC CTTCTCCTCC AACCCAACTT CTTCCACTCT 
    TCCCCCAAAA CTGCTCTTGT GAATCGTCTC GATGTTACTT CATCGGAGTT 
    TTCTTCCATG TTCCGTCGGA GCTTCCACGC TTTACGCAGC ACCGTAGGAG 
    ACTGGAGAAA GCTTCCGAAA CCGCCGGGTC AGGTTTTTGC GGAGAGGAGA 
    GAATACAGGA AGATTAGAAG GAGAGCTCCG AAGAAGAAAC AGGAATTGGA 
    GCTTAGTGTT AGTATCTGCA TCGAAGAACA GCTTCCTGAT GATCTCGAGA 
    TTCAGAATAT TGCAGAAATG CTTCGTCTCA ATGTACCTAT GGCAATGACA 
    TTGGCTTTCA ATGGTTTGAA AGATTCAAAG TATAAAACAA GAGAGACTGA 
    TATAGAAGAT CTTGGTGGGT ATGAAACTGT TGAATTATCG GTGATGCTTT 
    GTAATGATGA TTTTATTTGT AAACTCAACA AAGAGTGGAG AGGTGAAGAT 
    CATGCTACTG ATGTGCTTTC CATGTCACAA CATGTCCCTG AACTGAAGCT 
    TCCAGTACTT ATGATGGGAG ATCTCGTCAT TTCTGTTGAG ACAGCTGCAA 
    GGCAAGCTGC AGAGAGAGGG CATACTCTTC TTGATGAAAT ACGCATTCTT 
    GTGATTCATG GGTTGCTACA TCTACTGGGA TTTGATCATG AAATCAGCGA 
    CGAGGCTGAG CAAGAAATGG AAGAGGAAGA GGAGTTGTTG CTAAAAAACC 
    TTGGGTGGAA AGGAAAAGGA CTCATTCAGA GTGCATATGA CATTCAAAAA 
    ACAACTACAG TTCAGCCGGA GAAATCAGAT GACAGGAAGG AAGGGGATGG 
    CCTAAGATTG TACAAACCAA AGTTCTCCTA TATATTCTGT GATATGGATG 
    GTACACTGCT TAACAGTAAA AGTCAGATTT CGGAGGCAAA TGCAAAAGCT 
    TTAAAAGAAG CCCTTCTGAG GGGACTTAAA GTAGTCATAG CTACGGGGAA 
    GTCCCGCCCA GGTGCGATCA GAATCTTGAA GACGGCTGAT CTAACTGGAT 
    CCGATGGCAT TATCTCAGAG TCCTCTCCAG GCGTTTTCGT TCAGGGATTA 
    CTTGTCTATG GTAGACAAGG GAAAGAAGTG TATCGAGGAA ACTTAGACCG 
    AGATGTCTGC AGAGAGACCT GTCTTTATTC TTTGGAGCAT CGAATTCCTC 
    TCATTGCATT CAGCCAGGAT CGCTGCTTGA CATTGTTTGA CCACCCTCTT 
    GTCGACTCTC TTCACACAAT CTACAATGAG CCAAAGGCCG AAATTATATC 
    ATCGGTTGAT CAACTGATAG CTGAAGCTGA CATTCAGAAA GTGATATTTA 
    TGGACACAAC CGAGGGAGTC TCATCTGTTA TCCGTCCGTA TTGGTCAGAA 
    GCTACAGGAG ACCGTGCTAA TGTTGTTCAA GCTCAATCAG ACATGCTAGA 
    AATCGTCCCA CCCGGAACCT CCAAAGGGAA TGGTGTAAAA ATGCTACTCA 
    ATCATTTGGG CGTTTCACCG GATGAGATAA TGGCGATTGG AGATGGAGAA 
    AATGACATAG AGATGCTGCA ACTGGCCTCG TTGGGAGTTG CTCTGAGCAA 
    CGGTGCAGAA AAAACAAAGG CGGTGGCTGA TGTGATTGGT GTGAGCAACG 
    ACCAAGATGG TGTTGCTGAT GCCATCTACC GCTACGCATT CTGAGACTCC 
    ACCACCATAT TTAAGTACAA GATACACCAA ATTAAATTTT TGAGGTTAAG 
    TAGGCATTAT TCTTCTTCTT TGTCTTACAG ATAAAAGACA AACATTGGTC 
    ATTCTTGTCT CATTCACCCA CCTTTTGAAG GAAAATGATT GATTGC

    Gene models with high sequence identity

    1. AT2G25870.1 [+] show detail - haloacid dehalogenase-like hydrolase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Uncharacterised protein family UPF0054 21.718
    HMMTigr Uncharacterised protein family UPF0054 4.6e-39
    HMMTigr Cof protein 4.9e-53
    HMMTigr HAD-superfamily hydrolase, subfamily IIB 7.4e-19
    HMMPfam HAD superfamily hydrolase-like, type 3 2.1e-53
    HMMPfam Uncharacterised protein family UPF0054 9.2e-35
    PatternScan Cof protein 0
    PatternScan Cof protein 0
    PatternScan Uncharacterised protein family UPF0054, conserved site 0
    Gene3D no description 2.1e-35
    Gene3D no description 3.1e-37
    HMMPanther PHOSPHOSERINE PHOSPHATASE 6.5e-05
    superfamily HAD-like 2.3e-58
    superfamily Metalloproteases ("zincins"), catalytic domai 4.7e-36

    See the detailed result >

    AT2G25870.1

    Model type
    Protein coding
    Short Description
    haloacid dehalogenase-like hydrolase family protein
    Computational Description
    haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR