F02901

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02901

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02901

Determination of introduced cDNA(s)

  • RAFL05-12-B22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-B22 - Resource: pda09315

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-B22 - full reading 
    AATCCTTTTC CTTCTTCTTG TTGCCCTAGT ACGAGAGGAC CGGGAAGGAC 
    GCAATATATA GGATACTAGA TAGAGAGTGA CTGAAGGAGA GAAAAACAAA 
    AATGGCGATT GTTTCCGTCT CTAACTCTTT TCTCACTTTC AATTCTCCCA 
    ATCAGCTCCG ATTTAGCCGA AGAAGATTCT CTGCCATGGC TTCTTCAACT 
    ACTGGAGTGA GAGTCGCTGA AGGAGAAGGC AATTTGCCAA AACTTGTCCT 
    TACTTCTCCT CAGAACAGCG AGGCTGAGAT ATATCTCTTC GGAGGCTGCA 
    TTACTTCTTG GAAAGTTGCG AGCGGTAAAG ATCTTCTTTT TGTCAGACCA 
    GATGCTGTCT TCAATAAGAT TAAGCCCATT AGCGGAGGGA TTCCACATTG 
    TTTTCCACAG TTTGGACCTG GGCTAATTCA ACAGCATGGG TTTGGAAGGA 
    ACATGGACTG GTCTGTTGTC GATTCCCAGA ATGCAGATGA CAATGCTGCT 
    GTTACTCTTG AGCTTAAGGA TGGTCCCTAT AGTCGAGCCA TGTGGGACTT 
    TGCTTTCCAG GCTCTATACA AGGTCATTGT TGGCGCGGAC TCCCTTTCCA 
    CTGAGCTAAA GATTACAAAC ACAGACGATA AACCATTTTC TTTCAGCACT 
    GCGTTGCATA CTTACTTCCG TGCTTCTTCT GCGGGGGCCT CCGTGAGAGG 
    TCTAAAGGGT TGTAAAACTC TCAATAAGGA TCCAGACCCT AAGAACCCAA 
    TAGAGGGTAA AGAAGACAGG GATGCAGTCA CTTTTCCTGG ATTTGTGGAT 
    ACCGTCTATC TTGATGCTCC CAATGAATTG CAGTTTGATA ATGGCTTGGG 
    TGATAAAATA ATCATCAAAA ACACAAATTG GTCGGATGCG GTCTTGTGGA 
    ACCCGCATAC TCAGATGGAG GCTTGTTACA GAGACTTTGT GTGCGTGGAA 
    AATGCAAAGC TTGGGGATGT CAAGCTAGAG CCGGGACAGT CTTGGACTGC 
    AACACAACTT CTCAGCATCA GTTGAAAACA TTGTACTTTA AACTTATAAT 
    GTCCAGTGGA TCCATTTTCT TAAGCAATAA AAGTTTTATT TCCTCTCCCT

    Gene models with high sequence identity

    1. AT5G66530.1 [+] show detail - Galactose mutarotase-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther APOSPORY-ASSOCIATED PROTEIN C-RELATED 2e-89
    superfamily Glycoside hydrolase-type carbohydrate-binding 1.8e-60
    Gene3D Glycoside hydrolase-type carbohydrate-binding, subgroup 1.8e-61
    HMMPfam Aldose 1-epimerase 1.3e-42

    See the detailed result >

    AT5G66530.1

    Model type
    Protein coding
    Short Description
    Galactose mutarotase-like superfamily protein
    Computational Description
    Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR