F02921

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02921

Determination of introduced cDNA(s)

RAFL06-11-A17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-A17 - Resource: pda07535

full reading [+] show sequence

ACTCACTCTC ACTCACAAAA AAAAATGTCT ACCATTTCAA AACCTCTCTT 
CTTAAAACTT CTCTATATCT TCTTCTTCTT CTGCTACTCA GTTTCTCTCT 
CATGGTCTTC GTCTCTTTCT CTCCACTTTC CTCTCACATC TCTTCGTCTC 
ACTCCAACCA CAAACTCCTC CTCCTTCAAA ACCTCCCTCC TTTCTCGCCG 
GAACCCATCT CCGCCGTCGT CTCCGTACAC TTTCCGATCA AACATCAAAT 
ACTCAATGGC TCTAATCCTC TCTCTTCCCA TAGGAACACC ATCTCAGTCA 
CAAGAGCTAG TTCTTGACAC CGGAAGCCAA CTCTCATGGA TCCAATGCCA 
TCCCAAGAAA ATCAAGAAAC CACTTCCTCC TCCAACGACG TCGTTTGATC 
CTTCTTTATC TTCATCGTTC TCCGACCTAC CTTGCTCTCA TCCTCTTTGT 
AAACCTAGAA TTCCCGATTT TACCCTTCCC ACGTCTTGTG ACTCGAACCG 
TCTCTGTCAC TACTCTTACT TCTACGCTGA TGGAACCTTC GCCGAGGGCA 
ATCTCGTTAA AGAAAAATTC ACTTTCTCAA ATTCCCAAAC TACCCCTCCT 
TTGATTCTTG GTTGTGCTAA AGAGTCAACT GACGAGAAGG GTATTTTGGG 
AATGAATCTT GGTCGTCTTT CTTTTATCTC ACAAGCAAAG ATTTCTAAAT 
TCTCTTACTG TATCCCAACC CGGTCAAACC GTCCCGGTTT AGCCTCAACC 
GGCTCGTTTT ACCTCGGAGA TAACCCGAAT TCTCGTGGTT TCAAATACGT 
TTCTCTTTTG ACTTTTCCTC AAAGTCAACG CATGCCGAAT CTAGACCCTT 
TAGCTTACAC TGTACCATTA CAAGGTATCA GAATCGGACA AAAGAGACTC 
AACATACCCG GTTCTGTTTT TAGACCCGAT GCAGGTGGGT CGGGTCAAAC 
CATGGTTGAT TCGGGTTCTG AATTTACTCA CTTAGTCGAC GTGGCGTATG 
ATAAAGTCAA AGAAGAAATA GTGAGGCTTG TGGGATCAAG ATTAAAGAAA 
GGTTACGTGT ACGGTTCGAC AGCTGACATG TGTTTTGATG GTAACCATTC 
GATGGAGATC GGACGGTTGA TAGGCGATCT TGTGTTTGAG TTTGGGAGAG 
GTGTTGAGAT ACTCGTTGAG AAACAAAGCC TTTTGGTTAA CGTAGGAGGT 
GGGATTCACT GTGTTGGAAT CGGACGGTCA AGCATGCTTG GTGCAGCTAG 
TAATATAATC GGGAACGTTC ATCAGCAAAA TCTTTGGGTT GAGTTTGATG 
TGACCAATAG GAGAGTTGGT TTTAGTAAAG CTGAGTGTAG ATTATTGCCG 
TGAGTAGGTG AATATTCTTC TACGGTCGTG CGTATTAGTT TTGAGTTGTA 
TCTCATTATG ATGATCGTTG GATGTTTGAT CGAATGGTGT ATAGGAAATC 
TGGGATTTTT GTGGGTCCCG TAGAAGGACA ACTGTCTGAA GCAAACTTCT 
CAATCTTTAT TAGGCTCTGG AACTATGTAT AAATGTTTGT ACTATGATAA 
TTAAAAGCTT GTATATTAAA TGGTTAATAT AACTTGTTAT CAG

Gene models with high sequence identity

AT5G37540.1 [+] show detail - Eukaryotic aspartyl protease family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Peptidase aspartic	1.1e-76
PatternScan	Peptidase aspartic, active site	0
Gene3D	Peptidase aspartic, catalytic	3.3e-18
Gene3D	Peptidase aspartic, catalytic	3.7e-25
HMMPanther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	2.8e-90
HMMPanther	Peptidase A1	2.8e-90
FPrintScan	Peptidase A1	7e-05
FPrintScan	Peptidase A1	7e-05
FPrintScan	Peptidase A1	7e-05
HMMPfam	Peptidase A1	1.8e-05
HMMPfam	Peptidase A1	0.00026

See the detailed result >

AT5G37540.1

Model type: Protein coding
Short Description: Eukaryotic aspartyl protease family protein
Computational Description: Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G66180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR