F02939

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02939

Determination of introduced cDNA(s)

  • RAFL16-14-I15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-14-I15 - Resource: pda19431

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-14-I15 - full reading 
    GAAACAATTT GGATGCATAG AAAGGAAAAG AACAAAATCA AATCTAGCAA 
    ATAAAATGGA TTCACAAGCG CAGTTGCAAC GTACTCATGG TCATCACCAA 
    GCACAGGAGC CAATAAGGAT TCACCATCCA GAGGAAGAAG GGCATCATGA 
    AAAAGGACCA TCAAAAGTTC TGAAGAAAGT GAAGGAAAAA GCAAAGAAGA 
    TCAAGAATGT TCTTACTAAA CATGGACATG GTCATGAGCA CGATCGTGGA 
    GAACACATCC CTGACGATCA CGATCTAGAC CAAGAAGACG ATGAAGATGA 
    CTACAACGAC AACCAACTCC ACGGCGGTGC ACCAGCACGA GGAAAAGCTC 
    ATATTCCGGT GAAGGAGGAG ATAGTCCCTC CAGGATCGAA AGCTTTTCCA 
    GTTGTTTCCT CTTCACATAC AAAACCCTCT GAGCCAGTGA GAGGAGTTGG 
    CCACGAAGCA ATGTCTCGTC CTATAAAACA CTCCGGTGTA CCGGAGAAAG 
    AAGAGAGAAG AGGGGCTCCT ACACTGACGC CGCATAACAC TCCCGTGTCT 
    TTACTATCTG CAACAGAAGA TGTGACAAGA ACATTTGTTC CTGATGAACA 
    CAAGTCTCGA AACCAAAGTA AAGTTAATAT CGACAGACCC AAAGGATTGG 
    ACCAAGATCC AGCTGCTCCG GGATCTCATG GTGGGTTGTC AAATTATCAG 
    TCCAAAGTTA CTGACCCCAT CGGAAAATCT ACTGGAGAAA TTGGAGCAGC 
    ATCGACTGTC TCAGCTATTG GAAGGTTAGG GTTGGGAACT GATCTGCAGA 
    AGAAAAGCCA TGGCCTTGAT ACAAAACCGA CTGCTCAGGG ATCTCATGGT 
    GGAATGTCGA GTTATCAGTC CAAAGTTACT GATCCCACCG GTAAAGGAGC 
    TGGAGAACAA CCGAGTGTCG CAGCTTTTGG GAGGAGGAAC GAAACAGGTG 
    AAGATGATCA CATGGGACTG GGAAGAGATC TCCGGGAGAA AAGTCATGGT 
    TTTGATACTA AGTCAAGACC TGAAATGGGC AAGCACATAC CGGCGGGAGA 
    CTATGGATCT AGATTGGGGA AAGAATCTCC GGAGCGGAGT GATGAATTTG 
    ATCTGGGAAA AGATTTGCCG ACGAGAACTC AAGGTATACA AAACCCTCAG 
    GGTTTTGATT CCAGAGGTCA GAGGAGAGGA GAGGAGATGC ACCAGCCTAA 
    TCAGAGCAGC TACACCGATA AGATCTCATT AGCGACTTCG GTCGTAGCAG 
    ACAAAGCTGT GGCGGCGAAA AACGCCGTCG CTTCGAAGTT AGGTTACTCC 
    GGGGAAGGCG GCCACGAGAA TCGTGTGGAA GGAGCAGAAA ATCCTAGCTC 
    CGCTGGTGGA TACGGAAGTA CGGTCGCAAG TATGGTGACT CCAGTTTACG 
    AGAAGGTTAA AGAGACAGGA GCTAGTGTAA TGACGAAGTT ACCATTCACC 
    GGGACCGGGA CAGAGCAAGG ACAAGACAGG GGCGTCTCGG CGAAAGAATT 
    CCTTACGGAG AAACTGAGTC CGGGAGAGGA AGACAAGGCT TTGTCGGAAG 
    TGGTCACTGA GAAGCTTCAT CTTGGAGGAG GCGGTGGCGA AACTGCGCCA 
    CCGAAGAGAG GGATAGTGAC ACAATCGGAG GAGGTGGAGA AAAGGTTAGG 
    AGGGTTTAAG GATCCGAGCT CGGAAGCAGC TACGAAACAG GGTGAAGCAT 
    ATGCGGAGAA AGGCGAAGGA GGGATTGCGG AGAAGCTGAG AGGAGCTGTT 
    ACTTCTTGGA TCGCTGGTAC GACGGAAGAA GTGACGCAAA AGTCTACAGA 
    ATCTGTTCAA GACTCTACAC AGTCACTTGG CTCCACCATT GGGAATAAAA 
    TGGGAATTAC GGGTTCGGGA GGAGGTGAGG CAGGCCAACA AGGTTCTATG 
    CCTTTGCAAA AGAGATTTCA AGAATCTGGA AACTGAGATT CTGCTTCTTC 
    TTTTTAAATG TATGGTTTGT TAATCCTTTC TAATGTGCGT TGTGGTTTGA 
    TGATCCATGG CTTATTTTGA TGTATCTACT ACTAGTACCA TGTAAAAGTA 
    TGAATAAATT GAGTTAAATA GGAAAAAAAA AA

    Gene models with high sequence identity

    1. AT4G25580.1 [+] show detail - CAP160 protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G25580.1

    Model type
    Protein coding
    Short Description
    CAP160 protein
    Computational Description
    CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR