F02939

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F02939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F02939

Determination of introduced cDNA(s)

  • RAFL16-14-I15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-14-I15 - Resource: pda19431

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-14-I15 - full reading
    GAAACAATTT GGATGCATAG AAAGGAAAAG AACAAAATCA AATCTAGCAA 
    ATAAAATGGA TTCACAAGCG CAGTTGCAAC GTACTCATGG TCATCACCAA
    GCACAGGAGC CAATAAGGAT TCACCATCCA GAGGAAGAAG GGCATCATGA
    AAAAGGACCA TCAAAAGTTC TGAAGAAAGT GAAGGAAAAA GCAAAGAAGA
    TCAAGAATGT TCTTACTAAA CATGGACATG GTCATGAGCA CGATCGTGGA
    GAACACATCC CTGACGATCA CGATCTAGAC CAAGAAGACG ATGAAGATGA
    CTACAACGAC AACCAACTCC ACGGCGGTGC ACCAGCACGA GGAAAAGCTC
    ATATTCCGGT GAAGGAGGAG ATAGTCCCTC CAGGATCGAA AGCTTTTCCA
    GTTGTTTCCT CTTCACATAC AAAACCCTCT GAGCCAGTGA GAGGAGTTGG
    CCACGAAGCA ATGTCTCGTC CTATAAAACA CTCCGGTGTA CCGGAGAAAG
    AAGAGAGAAG AGGGGCTCCT ACACTGACGC CGCATAACAC TCCCGTGTCT
    TTACTATCTG CAACAGAAGA TGTGACAAGA ACATTTGTTC CTGATGAACA
    CAAGTCTCGA AACCAAAGTA AAGTTAATAT CGACAGACCC AAAGGATTGG
    ACCAAGATCC AGCTGCTCCG GGATCTCATG GTGGGTTGTC AAATTATCAG
    TCCAAAGTTA CTGACCCCAT CGGAAAATCT ACTGGAGAAA TTGGAGCAGC
    ATCGACTGTC TCAGCTATTG GAAGGTTAGG GTTGGGAACT GATCTGCAGA
    AGAAAAGCCA TGGCCTTGAT ACAAAACCGA CTGCTCAGGG ATCTCATGGT
    GGAATGTCGA GTTATCAGTC CAAAGTTACT GATCCCACCG GTAAAGGAGC
    TGGAGAACAA CCGAGTGTCG CAGCTTTTGG GAGGAGGAAC GAAACAGGTG
    AAGATGATCA CATGGGACTG GGAAGAGATC TCCGGGAGAA AAGTCATGGT
    TTTGATACTA AGTCAAGACC TGAAATGGGC AAGCACATAC CGGCGGGAGA
    CTATGGATCT AGATTGGGGA AAGAATCTCC GGAGCGGAGT GATGAATTTG
    ATCTGGGAAA AGATTTGCCG ACGAGAACTC AAGGTATACA AAACCCTCAG
    GGTTTTGATT CCAGAGGTCA GAGGAGAGGA GAGGAGATGC ACCAGCCTAA
    TCAGAGCAGC TACACCGATA AGATCTCATT AGCGACTTCG GTCGTAGCAG
    ACAAAGCTGT GGCGGCGAAA AACGCCGTCG CTTCGAAGTT AGGTTACTCC
    GGGGAAGGCG GCCACGAGAA TCGTGTGGAA GGAGCAGAAA ATCCTAGCTC
    CGCTGGTGGA TACGGAAGTA CGGTCGCAAG TATGGTGACT CCAGTTTACG
    AGAAGGTTAA AGAGACAGGA GCTAGTGTAA TGACGAAGTT ACCATTCACC
    GGGACCGGGA CAGAGCAAGG ACAAGACAGG GGCGTCTCGG CGAAAGAATT
    CCTTACGGAG AAACTGAGTC CGGGAGAGGA AGACAAGGCT TTGTCGGAAG
    TGGTCACTGA GAAGCTTCAT CTTGGAGGAG GCGGTGGCGA AACTGCGCCA
    CCGAAGAGAG GGATAGTGAC ACAATCGGAG GAGGTGGAGA AAAGGTTAGG
    AGGGTTTAAG GATCCGAGCT CGGAAGCAGC TACGAAACAG GGTGAAGCAT
    ATGCGGAGAA AGGCGAAGGA GGGATTGCGG AGAAGCTGAG AGGAGCTGTT
    ACTTCTTGGA TCGCTGGTAC GACGGAAGAA GTGACGCAAA AGTCTACAGA
    ATCTGTTCAA GACTCTACAC AGTCACTTGG CTCCACCATT GGGAATAAAA
    TGGGAATTAC GGGTTCGGGA GGAGGTGAGG CAGGCCAACA AGGTTCTATG
    CCTTTGCAAA AGAGATTTCA AGAATCTGGA AACTGAGATT CTGCTTCTTC
    TTTTTAAATG TATGGTTTGT TAATCCTTTC TAATGTGCGT TGTGGTTTGA
    TGATCCATGG CTTATTTTGA TGTATCTACT ACTAGTACCA TGTAAAAGTA
    TGAATAAATT GAGTTAAATA GGAAAAAAAA AA

    Gene models with high sequence identity

    1. AT4G25580.1 [+] show detail - CAP160 protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G25580.1

    Model type
    Protein coding
    Short Description
    CAP160 protein
    Computational Description
    CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR