F03001

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03001

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03001

Determination of introduced cDNA(s)

  • RAFL04-09-A19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-A19 - Resource: pda00222

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-A19 - full reading 
    ACCAACATAG ATCTCTCTCT TGCTGTGGCT CCTTTCTTCC TCTACACAGA 
    TCTTTGGATT CAGAAGAAAG AGATCTAAAA TGGGTGCTGC TGAAAACAAC 
    CTTGAAATGG AGGGTACCCT GGAGATCGGC ATGGAGTATA GAACTGTTTC 
    TGGTGTTGCG GGACCTCTCG TCATCCTTGA AAAAGTCAAG GGGCCTAAAT 
    ACCAAGAAAT TGTCAATATC CGTCTTGGGG ATGGAACTAC CCGACGTGGT 
    CAAGTTCTCG AAGTTGATGG AGAGAAAGCT GTTGTTCAGG TATTTGAGGG 
    AACATCTGGA ATCGACAACA AGTACACAAC TGTGCAATTT ACAGGAGAGG 
    TTTTGAAAAC TCCTGTTTCT TTGGATATGC TTGGTCGCAT CTTCAATGGT 
    TCAGGGAAGC CCATTGACAA CGGTCCACCT ATATTGCCTG AGGCGTACTT 
    GGATATTTCT GGAAGTTCTA TCAATCCCAG TGAGAGAACC TATCCTGAAG 
    AGATGATTCA GACGGGTATA TCCACCATTG ATGTCATGAA CTCTATCGCC 
    AGAGGACAGA AGATTCCCCT CTTTTCTGCC GCAGGTCTTC CCCACAATGA 
    AATTGCTGCT CAGATTTGCC GTCAGGCTGG TTTGGTTAAG CGTTTAGAGA 
    AGTCAGATAA TCTTCTCGAG CATCAGGAGG ATGATAACTT CGCCATTGTG 
    TTCGCAGCAA TGGGTGTGAA CATGGAGACT GCACAATTTT TTAAACGTGA 
    TTTCGAGGAG AATGGATCGA TGGAGAGAGT GACTCTTTTC CTTAACTTGG 
    CAAACGACCC CACTATTGAG CGTATCATCA CTCCTCGTAT CGCACTTACA 
    ACTGCTGAGT ACTTGGCATA TGAATGTGGC AAGCATGTCC TTGTCATTCT 
    CACAGACATG AGTTCCTACG CCGATGCTCT TCGTGAGGTC TCTGCTGCCC 
    GTGAAGAAGT GCCTGGAAGG CGTGGTTACC CAGGTTACAT GTACACCGAC 
    TTGGCTACCA TATACGAGAG AGCAGGGCGA ATTGAAGGGA GGAAAGGTTC 
    CATCACTCAA ATTCCCATTT TAACCATGCC AAACGATGAT ATCACGCATC 
    CCACACCAGA TCTGACAGGA TACATTACAG AGGGGCAAAT CTATATTGAC 
    CGACAACTTC ACAATAGACA GATCTACCCT CCGATCAATG TCTTGCCATC 
    TCTGTCTCGT CTCATGAAGA GTGCCATTGG TGAGGGTATG ACTCGCAGGG 
    ACCACTCTGA TGTTTCTAAT CAATTGTATG CCAATTACGC TATTGGAAAG 
    GACGTGCAGG CCATGAAAGC CGTGGTTGGA GAAGAAGCTC TTTCTTCCGA 
    GGATCTGCTA TATCTTGAGT TCTTGGATAA GTTCGAGAGG AAGTTTGTGG 
    CTCAGGGAGC TTATGATACC CGAAACATCT TCCAGTCACT CGACCTGGCA 
    TGGACTCTCC TCAGAATCTT CCCCCGTGAG TTACTTCACC GTATACCCGC 
    GAAAACCCTT GATCAGTTTT ACAGTCGCGA TACCACCAAC TGAAGAACAT 
    AGTTTCTACT GCCTTGGTGT GATGATATGT CCAAATGCAT CTTTATTTTT 
    TACTTCTGCG GTTGGATCAC ACCTCTGAGT CGTCCGTCCC AATAAATGGT 
    GTTTGTTCCC AATCGCTAGA CCCTTTATTA TTGTCTTCGA AACTGAGCAA 
    GCCAGGTTGA TTATTCTTTT TGTAAGAGAA ATTGAAATTC TTGTATAATT 
    TATGAGATTT TGCATCTTTT TTTTGGGGTA CCAAATTACT GGTTCAGAAC 
    AACATACATT TGTTTGTCTT ATTACTGTCA CGAATGTCAA TGCAGCTTCT 
    TCTTCTTTTT TC

    Gene models with high sequence identity

    1. AT4G38510.2 [+] show detail - ATPase, V1 complex, subunit B protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 1.6e-61
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal 7.7e-16
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal 0.00000000000094
    superfamily P-loop containing nucleoside triphosphate hyd 6e-89
    HMMPanther V-TYPE ATP SYNTHASE BETA CHAIN 2.6e-245
    HMMPanther ATP SYNTHASE 2.6e-245
    HMMTigr ATPase, V1 complex, subunit B 0
    PatternScan ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site 0
    Gene3D no description 5.9e-90
    HAMAP VATB_MF_00310 55.547

    See the detailed result >

    AT4G38510.2

    Model type
    Protein coding
    Short Description
    ATPase, V1 complex, subunit B protein
    Computational Description
    ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, ATP binding, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR