F03216

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03216

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03216

Determination of introduced cDNA(s)

  • RAFL05-21-P21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-P21 - Resource: pda02827

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-P21 - full reading 
    TGAGGAAAAA AAATTCTGGA ACTTTCGAGC TTCTGTTTTG CGGTGCTCTC 
    AAAGCTTATA TCGGATCTCG AATCTTGAAT CGGACTCAGA ACCTCGGATC 
    TTCGAAAATC GACGAACATG TCTTCTCCTG GCGAATTCTA TAACTCACTT 
    CCACCTATAA CCAAGGCTTA TGGTACGTTG TGCTTTTTCA CTACAGTAGC 
    CACGCAGCTT GGCTTAGTTG CTCCCGTTCA CATTGCTTTA ATTCCTGAAC 
    TTGTACTTAA GCAGTTCCAG ATCTGGAGGC TGATAACAAA CTTGTTTTTC 
    CTCGGTGGTT TCTCTATCAA TTTTGGAATA CGTCTTTTGA TGATAGCAAG 
    ATATGGAGTT CAACTCGAGA AAGGGCCATT TGAAAGGCGG ACAGCAGACT 
    TTTTGTGGAT GATGATCTTT GGATCCTTCA CTCTATTGGT ATTATCAGTC 
    ATACCATTTT TCTGGACACC GTTTCTTGGT GTTTCACTTG TGTTCATGCT 
    TCTTTATCTC TGGAGCCGAG AATTTCCAAA TGCCAACATC AGCCTATACG 
    GTCTTGTCAC TCTTAAGGCT TTCTACCTCC CATGGGCAAT GCTAGCACTT 
    GATGTTATCT TCGGTTCTCC GATCATGCCA GATCTTCTTG GCATCATAGC 
    TGGACATCTA TACTACTTCC TAACAGTCCT TCATCCTCTT GCTACCGGAA 
    AAAACTACCT GAAAACCCCA AAATGGGTTA ATAAAATCGT AGCAAGATGG 
    CGAATTGGAG CTCCAGTTGC AAGTGTTCGA CAAGCAGGTG GTGTAGGAGC 
    AGCAGGACCC GGAGCTGGAG GAGGAGTAGG AGGAGGAGGA GCTTATTCAA 
    GCGCTCGTGC CCCACCCGAG AGTTCAAACA CAGCATTCAG AGGTCGATCA 
    TATCGTCTCA CCGACTGAAA TAGAAATCTT CTCGAGTTTC TTTGTTTTCA 
    TCATATCAAA TCTTTTTCAA ACAATGCCAC TAACTAATCC CAGGTAGCTT 
    TGTGTTTTCG AACAGTACAG TTTTTGAATA TATGACTCTG TAGGAAGAAT 
    CTTTGAGGTT TTAATACAAT GTTCTTTTCA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT4G29330.1 [+] show detail - DERLIN-1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Der1-like 3.2e-46
    HMMPanther Der1-like 4.3e-87

    See the detailed result >

    AT4G29330.1

    Model type
    Protein coding
    Short Description
    DERLIN-1
    Computational Description
    DERLIN-1 (DER1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 918 Blast hits to 916 proteins in 241 species: Archae - 0; Bacteria - 22; Metazoa - 340; Fungi - 200; Plants - 147; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR