F03241

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F03241

Determination of introduced cDNA(s)

  • RAFL05-17-H03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-H03 - Resource: pda09354

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-H03 - full reading 
    CCCCGAGCCA CCACCATTCT CTTTTACTCC TTCGCCGAAT CTCACAACGC 
    CAAATTTTGG CGTTTCCACA GATCTATACA TCCCGGAGAT CTCCAACAAA 
    TCCGACACCG TTTTCTACTC CGACGAATCC TCCTCCGTAG ATCTAGTCAA 
    AAAACGAACC TAACGAAATT CGAAATCCTG ATCGGAGATG GCTCCGAGTA 
    TTCGAAAAGC GATTGGTGCG GTTAAAGACC AAACAAGCAT AGGAATCGCT 
    AAAGTAGCAA GCAACATGGC TCCAGATCTA GAAGTAGCCA TCGTGAAAGC 
    TACAAGTCAC GACGACGATC CCGCAAGCGA GAAATACATT CGTGAGATTC 
    TAAACCTGAC CTCTCTCTCT CGCGGCTACA TCCTCGCTTG TGTTACTTCC 
    GTTTCACGGC GATTGAGTAA GACGCGTGAT TGGGTTGTTG CTCTCAAGGC 
    TCTTATGCTT GTGCATAGAC TTCTTAATGA AGGAGATCCT ATTTTTCAAG 
    AAGAGATTCT TTATTCAACT AGACGAGGTA CGAGGATGTT AAACATGTCT 
    GATTTTCGCG ATGAAGCGCA TTCGAGTTCG TGGGATCATT CGGCTTTCGT 
    TAGAACTTAT GCTGGTTACT TGGATCAGAG GCTTGAGTTA GCTTTGTTTG 
    AGAGGAAAAG TGGTGTGTCG GTGAATAGTG GTGGTAATAG TAGTCATCAT 
    AGTAATAATG ATGATCGATA TGGGAGAGGA AGAGATGATT TCAGGTCTCC 
    ACCGCCGCGT TCTTATGATT ATGAGAACGG TGGTGGTGGT GGTAGTGACT 
    TTAGAGGTGA TAATAATGGT TATGGTGGTG TACCGAAGAG ATCTCGGTCT 
    TACGGAGATA TGACTGAGAT GGGAGGAGGA GGAGGAGGAG GAGGGAGAGA 
    TGAGAAGAAA GTTGTTACGC CTTTAAGGGA AATGACGCCC GAAAGGATTT 
    TCGGAAAGAT GGGTCATCTT CAACGGTTAC TTGATAGGTT TTTGTCATTG 
    AGACCTACTG GTTTAGCTAA GAACAGTAGG ATGATATTGA TCGCGTTGTA 
    TCCCGTTGTG AGGGAGAGTT TTAAGCTGTA TGCTGATATT TGTGAGGTTT 
    TGGCTGTTTT GTTGGATAAG TTTTTCGATA TGGAGTATTC GGATTGTGTC 
    AAGGCCTTTG ATGCTTATGC TAGTGCGGCT AAACAGATTG ATGAGCTTAT 
    TGCGTTTTAT AATTGGTGTA AGGAAACGGG TGTGGCGAGA TCGTCTGAGT 
    ATCCGGAAGT TCAGAGGATT ACAAGCAAGT TGTTGGAGAC TTTGGAAGAG 
    TTTGTTAGAG ATAGGGCAAA AAGAGGGAAG AGTCCCGAGA GGAAAGAGAT 
    CGAAGCTCCT CCTCCGGTAG TTGAAGAAGA GGAGCCTGAG CCTGATATGA 
    ATGAGATCAA AGCTCTTCCT CCTCCCGAGA ATTACACTCC TCCACCTCCG 
    CCTGAACCAG AACCTCAGCC CGAAAAACCG CAATTTACCG AGGATTTAGT 
    TAACTTGAGG GAGGATGAAG TCACAGCTGA TGACCAAGGG AACAAGTTTG 
    CGCTTGCACT CTTTGCTGGT CCACCGGGTA ATAACGGAAA ATGGGAAGCT 
    TTCTCCTCGA ACGGAGTGAC CTCTGCTTGG CAGAATCCCG CTGCAGAGCC 
    CGGTAAAGCG GATTGGGAAT TGGCATTGGT TGAAACAACG AGCAATTTAG 
    AAAAACAGAC AGCCGCTTTG GGTGGTGGGT TCGATAACTT GTTGCTCAAC 
    GGGATGTATG ATCAAGGAAT GGTCAGACAA CACGTTAGCA CCTCGCAATT 
    GACAGGTGGT AGCGCGAGCA GCGTAGCTTT ACCCTTACCT GGTAAAACCA 
    ACAATCAAGT ATTAGCCTTA CCTGCACCAG ATGGAACCGT TGAGAAAGTG 
    AACCAAGACC CATTCGCAGC TTCACTAACC ATTCCACCAC CTTCGTACGT 
    GCAAATGGCC GAGATGGAGA AGAAGCAGTA TCTACTGAGC CAAGAGCAGC 
    AGCTATGGCA GCAATATCAA CGTGATGGGA TGAGAGGTCA AGCCAGTTTG 
    GCGAAGATGA ACACCGGTCC AGTTCCGGCT TACGGAATGC CACCTGTCAA 
    CGGGATGGGA CCGCCACCGA CGGGGTATTA CTACAACAAT CCTTACTGAT 
    TCATTCTTTT TTGCACCCAT TCATATATGT GTAGATGACT CGTCTTCCAC 
    CTTTGATCTT GTGTGTGTTT TATTATATCC CCTCGGATTG TCGTAAAACG 
    ATTCCATCTT CTTCCTTGTC TCTGCTCGAG TTTGATTTAT AGTTTATGTA 
    CACTTTCTTG AGAATCTTGA TTCCCTTCTG TATAACATTT TGATATCATT 
    CATGTTTCCA CTGTTTAACT TAAAAC

    Gene models with high sequence identity

    1. AT2G25430.1 [+] show detail - epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ANTH 5.6e-41
    HMMPfam ANTH 9.5e-39
    ProfileScan Epsin-like, N-terminal 33.248
    HMMPanther CLATHRIN ASSEMBLY PROTEIN 3.2e-259
    HMMPanther CLATHRIN ASSEMBLY PROTEIN 3.2e-259
    Gene3D ENTH/VHS 6.1e-32
    Gene3D Clathrin adaptor, phosphoinositide-binding, GAT-like 4.3e-36
    HMMSmart Epsin-like, N-terminal 2.7e-45
    superfamily GAT-like domain 8.2e-42
    superfamily ENTH/VHS 1.6e-31

    See the detailed result >

    AT2G25430.1

    Model type
    Protein coding
    Short Description
    epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related
    Computational Description
    epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G32285.2); Has 1786 Blast hits to 1328 proteins in 221 species: Archae - 4; Bacteria - 135; Metazoa - 673; Fungi - 126; Plants - 678; Viruses - 2; Other Eukaryotes - 168 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR