F03342

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03342

Determination of introduced cDNA(s)

  • RAFL09-19-F01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-F01 - Resource: pda05503

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-F01 - full reading 
    AAAAAACTTC AAGAAAAAAA GATTCTTCAA AAGAGCAAAA AATCAATGGA 
    GAGAGCAAAG TCGAGGAAGC CTCATATCAT GATGATACCA TACCCACTTC 
    AAGGTCACGT TATCCCTTTT GTCCACTTAG CCATCAAACT TGCTTCTCAT 
    GGCTTCACCA TCACTTTCGT CAACACCGAC TCCATCCACC ACCACATCTC 
    CACCGCTCAC CAAGATGACG CCGGTGACAT CTTCTCCGCC GCTCGCAGCT 
    CCGGCCAGCA CGACATACGT TACACCACCG TGAGCGACGG CTTCCCTTTA 
    GACTTTGACC GGTCACTGAA CCATGACCAG TTTTTCGAAG GCATTCTCCA 
    CGTCTTCTCT GCCCACGTGG ATGATCTCAT CGCCAAACTC TCCCGCCGTG 
    ATGATCCTCC CGTGACTTGC TTGATCGCCG ACACGTTTTA TGTTTGGTCA 
    TCTATGATTT GCGACAAGCA CAACCTTGTA AATGTCTCGT TTTGGACCGA 
    ACCTGCCTTG GTCCTCAATC TCTATTATCA CATGGATCTC CTCATATCTA 
    ACGGTCATTT CAAATCTCTT GATAATCGTA AAGACGTGAT CGATTACGTA 
    CCAGGGGTTA AAGCAATAGA ACCAAAGGAC TTGATGTCAT ATCTTCAAGT 
    AAGCGACAAA GACGTAGACA CAAATACAGT AGTATACAGA ATATTATTCA 
    AGGCCTTTAA AGACGTCAAG AGAGCCGACT TCGTCGTATG CAACACGGTG 
    CAAGAGCTCG AACCAGACTC TCTCTCGGCT CTACAAGCCA AACAACCGGT 
    TTACGCTATC GGTCCGGTTT TCTCAACTGA TTCGGTAGTT CCCACAAGCT 
    TATGGGCCGA GTCAGACTGT ACCGAGTGGC TTAAGGGCCG GCCCACTGGG 
    TCAGTTCTCT ACGTCTCGTT TGGTAGCTAT GCACATGTTG GTAAGAAGGA 
    GATTGTTGAG ATAGCTCATG GGCTTTTGCT TAGTGGGATT AGTTTCATTT 
    GGGTTTTACG TCCGGATATA GTTGGATCCA ACGTACCAGA TTTTCTTCCA 
    GCCGGGTTTG TGGACCAAGC CCAAGATCGA GGTCTTGTGG TCCAATGGTG 
    CTGCCAGATG GAAGTTATTT CAAATCCGGC CGTGGGAGGG TTTTTCACAC 
    ATTGTGGATG GAATTCAATT CTAGAGAGCG TTTGGTGTGG TTTGCCTTTG 
    TTGTGTTATC CACTTTTGAC AGATCAGTTC ACGAATAGGA AGCTTGTGGT 
    CGATGATTGG TGCATTGGGA TTAATCTTTG TGAGAAGAAG ACAATCACAA 
    GGGACCAAGT CTCAGCGAAT GTTAAAAGAT TGATGAATGG AGAAACTTCA 
    AGTGAGCTAA GAAACAATGT TGAAAAGGTT AAACGTCATC TCAAAGATGC 
    GGTTACAACC GTTGGATCTT CGGAGACGAA TTTTAACTTG TTTGTTAGTG 
    AGGTCCGAAA TAGAATAGAA ACTAAATTGT GTAATGTAAA TGGACTAGAA 
    ATAAGTCCAT CAAACTAAAC AATC

    Gene models with high sequence identity

    1. AT2G36970.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 9.2e-45
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    HMMPanther UDP-GLUCOSYLTRANSFERASE 1.3e-126
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.3e-126
    Gene3D no description 6.8e-13
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 3.8e-22

    See the detailed result >

    AT2G36970.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Computational Description
    UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT2G28080.1); Has 6237 Blast hits to 6170 proteins in 304 species: Archae - 0; Bacteria - 63; Metazoa - 975; Fungi - 25; Plants - 5115; Viruses - 22; Other Eukaryotes - 37 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • RAFL06-70-E09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-E09 - Resource: pda07647

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-E09 - full reading 
    AATTCATTTC ATAATCATAC ACCTCTCTAC ATTTGTTACT ACTTTCTTCT 
    AACTTGTTTT CAAAGAGAAA TCACAATCTA TCTGTTCCAA GATGAGTCAA 
    TACAGCCAAA ACCAATCTTC AGGAGCTTAT CCTACGCCGC CAGTGTCTAC 
    CGGCCCTTAC GTGGCACCGC CACCGCTAGG TTACCCAACG AACGACACAA 
    GTCATGCCAC GGTGGCAACG GTGGAGACAA AGTCCAAGGG TGATGGATTC 
    TTAAAAGGCT GTCTTGCGGC CATGTGTTGT TGTTGTGTCC TCGACGCATG 
    CTTCTGAAGA CTTAGATGGT TTATTTTGAT TATCTTTGTA TTTTGCTTTA 
    CCAAAATGAT TCGACTAGGT TTATGACATT TGGTACTTCT ATTTGTTAAT 
    TCATTTCTAT ATCACTCTTT CTTTTGCATT GTGTAATTTT ATAAATTCTT 
    AATATATCGT TTGTTTTCTC TTAGACATCT TCTAAACCAC GCTAGATTCA 
    CATTTTTGAC TTTATTACCG GTTAGTCAAC GTGGACTTAA AATCAATTTA 
    ATAACACTAT ATAAGCCAAA GTTATAAACA ATTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G32210.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G32210.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR