F03342

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03342

Determination of introduced cDNA(s)

  • RAFL09-19-F01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-F01 - Resource: pda05503

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-F01 - full reading
    AAAAAACTTC AAGAAAAAAA GATTCTTCAA AAGAGCAAAA AATCAATGGA 
    GAGAGCAAAG TCGAGGAAGC CTCATATCAT GATGATACCA TACCCACTTC
    AAGGTCACGT TATCCCTTTT GTCCACTTAG CCATCAAACT TGCTTCTCAT
    GGCTTCACCA TCACTTTCGT CAACACCGAC TCCATCCACC ACCACATCTC
    CACCGCTCAC CAAGATGACG CCGGTGACAT CTTCTCCGCC GCTCGCAGCT
    CCGGCCAGCA CGACATACGT TACACCACCG TGAGCGACGG CTTCCCTTTA
    GACTTTGACC GGTCACTGAA CCATGACCAG TTTTTCGAAG GCATTCTCCA
    CGTCTTCTCT GCCCACGTGG ATGATCTCAT CGCCAAACTC TCCCGCCGTG
    ATGATCCTCC CGTGACTTGC TTGATCGCCG ACACGTTTTA TGTTTGGTCA
    TCTATGATTT GCGACAAGCA CAACCTTGTA AATGTCTCGT TTTGGACCGA
    ACCTGCCTTG GTCCTCAATC TCTATTATCA CATGGATCTC CTCATATCTA
    ACGGTCATTT CAAATCTCTT GATAATCGTA AAGACGTGAT CGATTACGTA
    CCAGGGGTTA AAGCAATAGA ACCAAAGGAC TTGATGTCAT ATCTTCAAGT
    AAGCGACAAA GACGTAGACA CAAATACAGT AGTATACAGA ATATTATTCA
    AGGCCTTTAA AGACGTCAAG AGAGCCGACT TCGTCGTATG CAACACGGTG
    CAAGAGCTCG AACCAGACTC TCTCTCGGCT CTACAAGCCA AACAACCGGT
    TTACGCTATC GGTCCGGTTT TCTCAACTGA TTCGGTAGTT CCCACAAGCT
    TATGGGCCGA GTCAGACTGT ACCGAGTGGC TTAAGGGCCG GCCCACTGGG
    TCAGTTCTCT ACGTCTCGTT TGGTAGCTAT GCACATGTTG GTAAGAAGGA
    GATTGTTGAG ATAGCTCATG GGCTTTTGCT TAGTGGGATT AGTTTCATTT
    GGGTTTTACG TCCGGATATA GTTGGATCCA ACGTACCAGA TTTTCTTCCA
    GCCGGGTTTG TGGACCAAGC CCAAGATCGA GGTCTTGTGG TCCAATGGTG
    CTGCCAGATG GAAGTTATTT CAAATCCGGC CGTGGGAGGG TTTTTCACAC
    ATTGTGGATG GAATTCAATT CTAGAGAGCG TTTGGTGTGG TTTGCCTTTG
    TTGTGTTATC CACTTTTGAC AGATCAGTTC ACGAATAGGA AGCTTGTGGT
    CGATGATTGG TGCATTGGGA TTAATCTTTG TGAGAAGAAG ACAATCACAA
    GGGACCAAGT CTCAGCGAAT GTTAAAAGAT TGATGAATGG AGAAACTTCA
    AGTGAGCTAA GAAACAATGT TGAAAAGGTT AAACGTCATC TCAAAGATGC
    GGTTACAACC GTTGGATCTT CGGAGACGAA TTTTAACTTG TTTGTTAGTG
    AGGTCCGAAA TAGAATAGAA ACTAAATTGT GTAATGTAAA TGGACTAGAA
    ATAAGTCCAT CAAACTAAAC AATC

    Gene models with high sequence identity

    1. AT2G36970.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 9.2e-45
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    HMMPanther UDP-GLUCOSYLTRANSFERASE 1.3e-126
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.3e-126
    Gene3D no description 6.8e-13
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 3.8e-22

    See the detailed result >

    AT2G36970.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Computational Description
    UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT2G28080.1); Has 6237 Blast hits to 6170 proteins in 304 species: Archae - 0; Bacteria - 63; Metazoa - 975; Fungi - 25; Plants - 5115; Viruses - 22; Other Eukaryotes - 37 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • RAFL06-70-E09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-E09 - Resource: pda07647

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-E09 - full reading
    AATTCATTTC ATAATCATAC ACCTCTCTAC ATTTGTTACT ACTTTCTTCT 
    AACTTGTTTT CAAAGAGAAA TCACAATCTA TCTGTTCCAA GATGAGTCAA
    TACAGCCAAA ACCAATCTTC AGGAGCTTAT CCTACGCCGC CAGTGTCTAC
    CGGCCCTTAC GTGGCACCGC CACCGCTAGG TTACCCAACG AACGACACAA
    GTCATGCCAC GGTGGCAACG GTGGAGACAA AGTCCAAGGG TGATGGATTC
    TTAAAAGGCT GTCTTGCGGC CATGTGTTGT TGTTGTGTCC TCGACGCATG
    CTTCTGAAGA CTTAGATGGT TTATTTTGAT TATCTTTGTA TTTTGCTTTA
    CCAAAATGAT TCGACTAGGT TTATGACATT TGGTACTTCT ATTTGTTAAT
    TCATTTCTAT ATCACTCTTT CTTTTGCATT GTGTAATTTT ATAAATTCTT
    AATATATCGT TTGTTTTCTC TTAGACATCT TCTAAACCAC GCTAGATTCA
    CATTTTTGAC TTTATTACCG GTTAGTCAAC GTGGACTTAA AATCAATTTA
    ATAACACTAT ATAAGCCAAA GTTATAAACA ATTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT2G32210.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G32210.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR