F03506

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03506

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F03506

Determination of introduced cDNA(s)

  • RAFL09-57-G18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-57-G18 - Resource: pda08465

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-57-G18 - full reading 
    ACATTGAAAA GGCTTCAACG ATGTTTCTAA ATTACCTGAC TTGGAAGAGA 
    AGCATGCTCC CAAAGGGGCA CATACCAGAA GCAGAGATTG CAAATGATCT 
    ATCGCATAAC AAGATGTGTA TGCAAGGTCA TGACAAGATG GGTCGACCTA 
    TCGCTGTTGC CATTGGGAAC AGACATAACC CTTCCAAAGG CAACCCTGAC 
    GAGTTCAAGC GTTTTGTTGT CTACACGCTC GAGAAGATTT GTGCTAGAAT 
    GCCGAGAGGT CAAGAGAAAT TCGTAGCAAT TGGAGATCTG CAAGGCTGGG 
    GATATTCTAA TTGTGACATC CGTGGCTACC TTGCTGCTCT TTCCACTTTG 
    CAGGATTGTT ACCCAGAGAG ATTAGGGAAA CTCTATATAG TTCATGCCCC 
    CTACATTTTC ATGACCGCAT GGAAGGTCAT TTATCCTTTT ATCGACGCCA 
    ACACCAAGAA AAAGATTGTT TTCGTGGAGA ACAAGAAACT CACTCCAACG 
    CTGCTTGAAG ACATAGACGA AAGCCAACTT CCCGACATCT ACGGAGGCAA 
    ATTGCCACTT GTTCCTATTC AGGAGACCTG ATTATAGGTC TTACTACGGC 
    CCACCTCTAT TTCCAAATTA TTACTTACTA GTATTATTTT TTATTTGAAT 
    AAAATGAAAA ACATATTGAG TGTCGCCAAA TGCCAACAAT TATATATTTA 
    CTGCCAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G01630.1 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
      E-value: 0; Score: 99.86

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR10174 2.00001392772266e-116
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 1.2000011745814e-44
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 1.79999754022375e-49
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 7.4e-30
    HMMPanther PTHR10174:SF2 2.00001392772266e-116
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 0
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 2.4e-48

    See the detailed result >

    AT1G01630.1

    Model type
    Protein coding
    Short Description
    Sec14p-like phosphatidylinositol transfer family protein
    Computational Description
    Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR