F03512

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03512

Determination of introduced cDNA(s)

  • RAFL06-69-M11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-M11 - Resource: pda03330

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-M11 - full reading
    AAGAAGTAGC AGAACAATGG CGACTTCTCA GCAATTTTTA AACCCTACAC 
    TCTTCAAATC CTTAGCTTCC TCAAACAAAA ACTCATGTAC TCTCTGCCCA
    TCTCCTTTCT TGCAACTCAA GTCCGCCTCC ACAATTTTCA ATTACAAACC
    ACTTACTTCC TCCTCCGCCA CGATCATCAC ACGCGTCGCT GCATCATCCT
    CCGATTCAGG CGAGTCAATA ACCAGAGAGA CTTTCCACGG CCTCTGCTTC
    GTCTTGAAAG ACAACATCGA CACCGATCAA ATAATCCCCG CCGAGTACGG
    CACTCTCATC CCTTCGATTC CAGAAGATCG CGAGAAACTC GGCTCTTTCG
    CGCTTAACGG CTTACCAAAA TTCTACAACG AACGTTTCGT TGTTCCAGGA
    GAGATGAAAT CAAAGTACTC AGTCATCATC GGCGGCGATA ATTTCGGTTG
    CGGATCTTCC CGCGAACACG CTCCAGTTTG TCTCGGCGCG GCGGGAGCTA
    AAGCTGTGGT GGCGGAATCG TACGCTAGGA TCTTTTTCAG GAACTGTGTA
    GCTACAGGTG AGATTTTCCC GTTGGAATCG GAGGTTAGGA TTTGCGACGA
    GTGCAAAACA GGGGATGTGG TGACAATCGA ACACAAGGAA GACGGTAGTA
    GTTTGCTGAT CAATCATACG ACGAGGAAAG AATACAAACT GAAACCGCTC
    GGTGATGCCG GTCCGGTGAT CGACGCCGGT GGAATCTTCG CTTATGCAAG
    AAAAGCCGGC ATGATTCCTT CTGCTTGAAT GTAATCGGAT CCATAATTTA
    TCGGTTCTGA GTTTAATCCG GTTTGGTTTA TTTGGTTCGA GAACCGGTAC
    TAACGAAATA AATTATTACC AAACCAAAAT TTCTTCTGGT TCGACTTTGT
    TTGCCACGTG GAAACAGCGA TATAAACAAG TGCCCAAAAA GGCTTGCAAT
    GGTTTTTGTA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G58990.1 [+] show detail - isopropylmalate isomerase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aconitase A/isopropylmalate dehydratase small subunit, swivel 4.9e-18
    Gene3D Aconitase/3-isopropylmalate dehydratase, swivel 4.2e-26
    HMMPanther 3-isopropylmalate dehydratase, small subunit-like 1.1e-52
    HMMPanther Aconitase-like core 1.1e-52
    superfamily Aconitase/3-isopropylmalate dehydratase, swivel 3.1e-38

    See the detailed result >

    AT3G58990.1

    Model type
    Protein coding
    Short Description
    isopropylmalate isomerase 1
    Computational Description
    isopropylmalate isomerase 1 (IPMI1); FUNCTIONS IN: hydro-lyase activity, 3-isopropylmalate dehydratase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: plastid; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-isopropylmalate dehydratase, small subunit-like (InterPro:IPR012305), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937); BEST Arabidopsis thaliana protein match is: Aconitase/3-isopropylmalate dehydratase protein (TAIR:AT2G43090.1); Has 8940 Blast hits to 8939 proteins in 2288 species: Archae - 372; Bacteria - 5509; Metazoa - 6; Fungi - 358; Plants - 71; Viruses - 0; Other Eukaryotes - 2624 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR