F03523

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03523

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03523

Determination of introduced cDNA(s)

  • RAFL21-30-F07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-30-F07 - Resource: pda11997

    full reading [+] show sequence

    Nucleotide sequence: RAFL21-30-F07 - full reading
    ACCAGTTTAA AAATGGCGGC TTTGATCCAG ACCATCCATG GTGGTGTGGT 
    TGTTACCAGA ACCTTGACTC TTGTTTATCC TTCTACCTTT ACGTCCAGAC
    ACAAAGCTCT GAACCAGATG ACAAGTAGCA GTAACAGCGG CTTGCGACGG
    TTCCTGTTCA CTCCGCCTCA GCGGCTAAGC CAAGGTATCT GTTACTGGGG
    AGCAGAGCTA AGCAACAATG TGTCATGGAC TTACAAAACG AAAATGGTTG
    TTCGATCCAA GGCCGGAGCA GTGCCTCTGA TGAAGCATGG CGACCGGTTT
    CTCTCCTCTC TCTCGTCTCC AGCCTTAGCT GGTGATCCGT CAGCGATAAA
    CCGACACATT AAGAAGTTTG TGGCTGCTTC ACCCAAATCA GTTGCTCTCA
    ATGTCCTCTC TCATCTCCTC TCTGATCAAA CCTCCCATCC TCATCTCTCC
    TTCTTTGCTC TGTCTTTGTA TTCGGAAATT ACTGAAGCGT CGTGGTTTGA
    TTGGAATCCT AAACTCATTG CTGAACTTAT TGCTTTGCTC AATAAACAAG
    AAAGATTTGA TGAATCAGAA ACGCTACTTT CTACTGCGGT TTCGAGACTG
    AAGTCAAATG AAAGAGACTT TACTCTCTTC CTCTGCAATT TGGTTGAATC
    AAATTCTAAA CAAGGGTCTA TACAAGGTTT CAGTGAAGCA TCTTTTCGTT
    TGAGAGAGAT AATCCAAAGA TCATCATCAG TTTATGTCAA AACTCAAGCT
    TACAAGTCTA TGGTTTCTGG ATTATGTAAC ATGGACCAGC CTCATGATGC
    GGAAAGAGTT ATCGAGGAGA TGAGAATGGA AAAAATAAAG CCGGGATTGT
    TTGAATATAA GTCTGTTCTA TACGGCTATG GAAGATTAGG ATTGTTTGAC
    GATATGAACA GAGTAGTACA CAGAATGGGA ACAGAAGGTC ACAAAATCGA
    CACAGTTTGT TCAAATATGG TTCTCTCTTC CTATGGAGCT CATGATGCAT
    TGCCCCAAAT GGGTTCTTGG TTACAGAAGT TGAAGGGTTT TAATGTTCCT
    TTCTCCATAA GGACGTATAA CTCGGTCTTG AATTCTTGTC CTACCATCAT
    ATCAATGTTG AAAGACTTGG ATAGCTGTCC GGTTTCTCTT TCTGAACTGC
    GTACTTTTCT GAATGAGGAC GAAGCACTTC TGGTCCATGA ATTGACTCAG
    TCATCAGTTT TAGATGAAGC AATTGAGTGG AACGCGGTAG AGGGTAAGTT
    GGATTTACAT GGTATGCACT TGAGCTCATC GTATTTGATA TTGCTGCAAT
    GGATGGATGA GACCAGACTT AGATTTAGCG AAGAAAAGTG TGTAATTCCT
    GCAGAGATTG TAGTTGTTTC TGGATCTGGA AAGCATAGCA ATGTAAGAGG
    AGAGTCACCG GTGAAAGCGC TGGTTAAAAA GATAATGGTG CGTACTGGAA
    GCCCGATGAG AATTGACCGG AAGAATGTTG GTAGTTTTAT TGCCAAGGGA
    AAAACTGTTA AAGAATGGCT CTGCAAATGA AGATTTATAA CTGTATATTT
    TGATCACAAT TTGCTTAAGA TTGATCAGGA ATAAGTTTTG CTTGGAATCC
    AAATCAACTC TTGGTGTCAA ATTTTCCACC AGAACTAATC AGGTGAGTCG
    AAATTTTCTC TTTACACTCT TAAAATTACC TGCGTGGTAG TAAAATTCTG
    AATAGCTGGT TTTAGAATAA GAGAAATCTG AACAAAAATC ATTTCAGTTT
    TCAAGTATGT ATGTTAAACC CTAGAGCTCT GTGAAATTTT AACAATAGTT
    TGTTTGTTTC TGTTTCTGGT GTATCTTTAG CTATATTCCA TGAAGTTTCT
    AGTCTTGAAT AATGTGTATA GTTTATTTCA AGCAATGGCT CTGGAGCTTT
    AGTTTGTTTA AAAGTGCATC TGCTCTAGTC CTTTGATTTG GATAGCAAAT
    AAGTGAAAGT TCTTGTCCCC

    Gene models with high sequence identity

    1. AT2G17033.2 [+] show detail - pentatricopeptide (PPR) repeat-containing protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Smr protein/MutS2 C-terminal 20.233
    ProfileScan Pentatricopeptide repeat 10.424
    ProfileScan Pentatricopeptide repeat 7.991
    HMMTigr Pentatricopeptide repeat 0.0000034
    HMMTigr Pentatricopeptide repeat 0.00065
    HMMPanther SNF1-LIKE PROTEIN KINASE/SALT INDUCIBLE PROTE 2.8e-16
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.8e-16
    HMMPfam Pentatricopeptide repeat 0.00048
    HMMPfam Pentatricopeptide repeat 0.32
    HMMSmart Smr protein/MutS2 C-terminal 3.2e-23

    See the detailed result >

    AT2G17033.2

    Model type
    Protein coding
    Short Description
    pentatricopeptide (PPR) repeat-containing protein
    Computational Description
    pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR