F03523

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03523

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03523

Determination of introduced cDNA(s)

RAFL21-30-F07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-30-F07 - Resource: pda11997

full reading [+] show sequence

ACCAGTTTAA AAATGGCGGC TTTGATCCAG ACCATCCATG GTGGTGTGGT 
TGTTACCAGA ACCTTGACTC TTGTTTATCC TTCTACCTTT ACGTCCAGAC 
ACAAAGCTCT GAACCAGATG ACAAGTAGCA GTAACAGCGG CTTGCGACGG 
TTCCTGTTCA CTCCGCCTCA GCGGCTAAGC CAAGGTATCT GTTACTGGGG 
AGCAGAGCTA AGCAACAATG TGTCATGGAC TTACAAAACG AAAATGGTTG 
TTCGATCCAA GGCCGGAGCA GTGCCTCTGA TGAAGCATGG CGACCGGTTT 
CTCTCCTCTC TCTCGTCTCC AGCCTTAGCT GGTGATCCGT CAGCGATAAA 
CCGACACATT AAGAAGTTTG TGGCTGCTTC ACCCAAATCA GTTGCTCTCA 
ATGTCCTCTC TCATCTCCTC TCTGATCAAA CCTCCCATCC TCATCTCTCC 
TTCTTTGCTC TGTCTTTGTA TTCGGAAATT ACTGAAGCGT CGTGGTTTGA 
TTGGAATCCT AAACTCATTG CTGAACTTAT TGCTTTGCTC AATAAACAAG 
AAAGATTTGA TGAATCAGAA ACGCTACTTT CTACTGCGGT TTCGAGACTG 
AAGTCAAATG AAAGAGACTT TACTCTCTTC CTCTGCAATT TGGTTGAATC 
AAATTCTAAA CAAGGGTCTA TACAAGGTTT CAGTGAAGCA TCTTTTCGTT 
TGAGAGAGAT AATCCAAAGA TCATCATCAG TTTATGTCAA AACTCAAGCT 
TACAAGTCTA TGGTTTCTGG ATTATGTAAC ATGGACCAGC CTCATGATGC 
GGAAAGAGTT ATCGAGGAGA TGAGAATGGA AAAAATAAAG CCGGGATTGT 
TTGAATATAA GTCTGTTCTA TACGGCTATG GAAGATTAGG ATTGTTTGAC 
GATATGAACA GAGTAGTACA CAGAATGGGA ACAGAAGGTC ACAAAATCGA 
CACAGTTTGT TCAAATATGG TTCTCTCTTC CTATGGAGCT CATGATGCAT 
TGCCCCAAAT GGGTTCTTGG TTACAGAAGT TGAAGGGTTT TAATGTTCCT 
TTCTCCATAA GGACGTATAA CTCGGTCTTG AATTCTTGTC CTACCATCAT 
ATCAATGTTG AAAGACTTGG ATAGCTGTCC GGTTTCTCTT TCTGAACTGC 
GTACTTTTCT GAATGAGGAC GAAGCACTTC TGGTCCATGA ATTGACTCAG 
TCATCAGTTT TAGATGAAGC AATTGAGTGG AACGCGGTAG AGGGTAAGTT 
GGATTTACAT GGTATGCACT TGAGCTCATC GTATTTGATA TTGCTGCAAT 
GGATGGATGA GACCAGACTT AGATTTAGCG AAGAAAAGTG TGTAATTCCT 
GCAGAGATTG TAGTTGTTTC TGGATCTGGA AAGCATAGCA ATGTAAGAGG 
AGAGTCACCG GTGAAAGCGC TGGTTAAAAA GATAATGGTG CGTACTGGAA 
GCCCGATGAG AATTGACCGG AAGAATGTTG GTAGTTTTAT TGCCAAGGGA 
AAAACTGTTA AAGAATGGCT CTGCAAATGA AGATTTATAA CTGTATATTT 
TGATCACAAT TTGCTTAAGA TTGATCAGGA ATAAGTTTTG CTTGGAATCC 
AAATCAACTC TTGGTGTCAA ATTTTCCACC AGAACTAATC AGGTGAGTCG 
AAATTTTCTC TTTACACTCT TAAAATTACC TGCGTGGTAG TAAAATTCTG 
AATAGCTGGT TTTAGAATAA GAGAAATCTG AACAAAAATC ATTTCAGTTT 
TCAAGTATGT ATGTTAAACC CTAGAGCTCT GTGAAATTTT AACAATAGTT 
TGTTTGTTTC TGTTTCTGGT GTATCTTTAG CTATATTCCA TGAAGTTTCT 
AGTCTTGAAT AATGTGTATA GTTTATTTCA AGCAATGGCT CTGGAGCTTT 
AGTTTGTTTA AAAGTGCATC TGCTCTAGTC CTTTGATTTG GATAGCAAAT 
AAGTGAAAGT TCTTGTCCCC

Gene models with high sequence identity

AT2G17033.2 [+] show detail - pentatricopeptide (PPR) repeat-containing protein
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Smr protein/MutS2 C-terminal	20.233
ProfileScan	Pentatricopeptide repeat	10.424
ProfileScan	Pentatricopeptide repeat	7.991
HMMTigr	Pentatricopeptide repeat	3.4e-06
HMMTigr	Pentatricopeptide repeat	0.00065
HMMPanther	SNF1-LIKE PROTEIN KINASE/SALT INDUCIBLE PROTE	2.8e-16
HMMPanther	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	2.8e-16
HMMPfam	Pentatricopeptide repeat	0.00048
HMMPfam	Pentatricopeptide repeat	0.32
HMMSmart	Smr protein/MutS2 C-terminal	3.2e-23

See the detailed result >

AT2G17033.2

Model type: Protein coding
Short Description: pentatricopeptide (PPR) repeat-containing protein
Computational Description: pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR