F03545

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03545

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03545

Determination of introduced cDNA(s)

  • RAFL05-17-L24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-L24 - Resource: pda02732

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-L24 - full reading 
    AAGTATCAAA AAAATTACAA CTTTACGATT TGCTTAGAAA GGAGAAGACA 
    TCTGGAGCAA CAGGATTTAC AAAAGTTATT ATCTTTATCG ATTTCTCTTC 
    TTCCTAGACC CAACAGACGA AGAGAATTTG TTGTTGGTTG TCTCTGGTCT 
    CTTCGTCTAG GTTTTTTTTG GGTTATTAAA GATGGTGAGG ATCGTGAGAA 
    GTTGTTTACA GTCCATGTTA AAGCTCGTGA ATTCTCTAAT TGGGATGGTT 
    GGGATTGCTA TGATTCTCTA CGCTGTTTGG CTGATTAGGC AATGGCAAGA 
    ACAAATGGGA AATCTTCCTT TTGCTGATTC TGATCACCCT GTTCCGTGGT 
    TCATTTATTC ATTTCTTGGT CTCGGGGCCA TTCTCTGTGT TGTCACTTGT 
    GCCGGGCACA TAGCTGCTGA AACCGTGAAT GGATGTTGCC TTTACTTGTA 
    TATGGGATTC ATAGTCTTGC TAACTATGGT TGAAGGCGGT GTAGTTGCCG 
    ATATCTTTCT AAACCGTGAC TGGAAAAAGG ACTTTCCAGA GGATCCAAGT 
    GGTGCTTTCC ACCAGTTCTC TAAGTTCATC GAGTCAAACT TCAAGATTTG 
    CAAGTGGATA GGTCTCTCTA TTGTCTGTGT CCAGGGTCTA TCAGTTTTAA 
    TAGCCATGTT GCTCAAAGCT CTTGGACCTC ACCCTCACCG ACATTATGAT 
    AGTGACGATG AATACAATGT AAGCACAGTT GCACTCCTGC AGGATGCTCG 
    TCAGCCGCCT CCATACGTTG TTGGAGAACC CATGTATGGA GCCAAACCGG 
    GAGCTTGGAC AGTTAGATTA ATGAAAGGGC AAACCGGTGA GAGGTGAAAA 
    CAAAGAAACT CGTAGAAGAA AATGGCAAAG CAGAGTCTGC TCTTTCCATG 
    TGTGCATTTA CTTTGGCTTC TTATTGCATC TCTTTCTTTC ACTATTTATC 
    TCTTGTAAAT GTTGAATACA TATATTTGGG ATGTTCTTAC ATATTAAAGA 
    CTATGTGATG TATGTAAATC TCTCTCCACT CTATTGTTGA CCAAAATTAT

    Gene models with high sequence identity

    1. AT2G20740.1 [+] show detail - Tetraspanin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G20740.1

    Model type
    Protein coding
    Short Description
    Tetraspanin family protein
    Computational Description
    Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 160 Blast hits to 160 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR