F03550

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03550

Determination of introduced cDNA(s)

RAFL06-08-N08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-N08 - Resource: pda02909

full reading [+] show sequence

AACAGAAGAG TTCCTCGACG CCATCAAGAG GAGCAACTAT GGCTGGAGAA 
CTTGTGTCGT TTGGAATAAA AAAGCTTTGG GACCTACTGA GTCAAGAATG 
CGAGCAATTT CAGGGAGTTG AAGATCAAGT TACTGGACTA AAACGTGATC 
TAAACTTGTT AAGCTCTTTT CTAAAAGATG CAGATGCAAA GAAACATACA 
ACTGCGGTGG TGAGAAATGT TGTCGAAGAA ATAAAGGAAA TTGTTTACGA 
CGCAGAAGAT ATAATTGAAA CATATCTTCT TAAAGAAAAA CTTTGGAAAA 
CAAGTGGAAT CAAGATGCGT ATCAGAAGAC ATGCTTGCAT TATTTCAGAT 
CGTAGGAGAA ATGCATTAGA TGTTGGAGGC ATACGTACGA GGATCTCGGA 
TGTGATCCGA GATATGCAGA GTTTTGGAGT GCAACAAGCT ATCGTTGATG 
GTGGTTATAT GCAACCTCAA GGTGATAGAC AAAGGGAGAT GCGACAAACG 
TTTTCTAAGG ACTACGAAAG CGATTTTGTG GGGTTGGAGG TAAATGTTAA 
GAAACTGGTT GGATATTTGG TGGACGAAGA AAACGTTCAA GTGGTTTCCA 
TAACCGGGAT GGGTGGTCTA GGTAAAACCA CACTTGCTAG ACAGGTTTTT 
AACCATGAGG ATGTTAAACA TCAGTTTGAT AGACTCGCAT GGGTGTGTGT 
CTCACAAGAG TTTACTCGGA AGAATGTATG GCAAATGATC TTGCAGAATC 
TAACCTCTAG AGAAAAGAAA GATGAAATCT TGCAAATGGA AGAAGCTGAA 
CTCCATGATA AACTCTTTCA GCTATTGGAG ACATCTAAAT CATTAATTGT 
CTTTGATGAC ATATGGAAAG ACGAAGATTG GGACCTAATA AAGCCAATAT 
TTCCACCCAA TAAAGGTTGG AAGGTGCTTC TTACTTCTCA AAATGAGAGT 
GTCGCGGTAC GTGGGGATAT AAAATATCTC AACTTTAAAC CAGAATGCCT 
AGCCATTGAG GATAGTTGGA CACTTTTCCA AAGAATAGCA TTTCCAAAGA 
AAGATGCATC TGAATCTAAG GTTGACGAGG AAATGGAAGA TATGGGTAAG 
CAAATGTTAA AACATTGTGG AGGGCTACCA TTAGCCATCA AAGTGTTAGG 
AGGTTTGTTA GCTGCAAAGT ACACAATGCA TGATTGGGAA AGACTATCCG 
TAAATATCGG ATCTGATATC GTGGGAAGAA CCAGCAGTAA CAACAGTTCA 
ATATACCATG TATTGTCTAT GAGCTTTGAG GAGTTGCCTA GTTATTTGAA 
ACATTGTTTC CTCTACCTGG CCCATTTTCC AGAAGATCAT AAGATTAACG 
TGGAGAAATT GTCTTATTGT TGGGCTGCAG AAGGAATATC CACCGCCGAA 
GATTATCACA ATGGAGAGAC CATTCAAGAT GTTGGACAGA GCTACCTAGA 
GGAGTTAGTG AGGAGGAATA TGATAATTTG GGAAAGAGAT GCTACTGCTT 
CGAGATTTGG AACTTGTCAT TTGCATGACA TGATGAGAGA AGTTTGTTTG 
TTTAAAGCCA AGGAAGAAAA CTTCCTACAA ATTGCTGTAA AAAGTGTAGG 
TGTAACCAGC TCCTCGACCG GAAACTCTCA ATCTCCTTGT AGATCTCGCA 
GGCTTGTCTA CCAATGTCCA ACTACATTAC ATGTTGAGAG AGATATAAAC 
AATCCAAAAC TTAGATCTCT CGTGGTTCTC TGGCATGATT TATGGGTAGA 
AAATTGGAAG CTATTAGGTA CAAGCTTTAC AAGGTTAAAA CTTCTGA

Gene models with high sequence identity

AT1G58390.1 [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	1.5e-14
HMMPfam	NB-ARC	5e-82
FPrintScan	Disease resistance protein	2e-16
FPrintScan	Disease resistance protein	2e-16
FPrintScan	Disease resistance protein	2e-16

See the detailed result >

AT1G58390.1

Model type: Protein coding
Short Description: Disease resistance protein (CC-NBS-LRR class) family
Computational Description: Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, LP.08 eight leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58400.1); Has 14341 Blast hits to 13745 proteins in 491 species: Archae - 4; Bacteria - 531; Metazoa - 280; Fungi - 132; Plants - 13314; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link: InterPro Scan - TAIR