F03634

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03634

Determination of introduced cDNA(s)

  • RAFL08-12-F21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-12-F21 - Resource: pda17584

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-12-F21 - full reading 
    CCCCGGTTTT TCTCTCTCTC TCTCTCCCCT CAAACTTAAA TTCACATTTT 
    AATACTTGTT ACTTCAACTA TAATAATAAT AATAATCTTT CTTCATTATA 
    TATTTTCCTC TCCTCTCAGA TCTTCTCTCT CACCATCTTC TCTTGAGATC 
    AAGATTGAGT ATTCTTGTCT CAAGAATCGA TACTCGAGAG CTCTTATGGA 
    CCAAAATGGT CATAACGACG AAGCAGAAAC AGTTTCATGC GGCAACGGCA 
    ACTGCAAAAG CAAGATCGTG CCTGGAGATG ATCACGGTGG AGATGAGAGT 
    AGTGGTACCA AGAGAAGGAA GAAGAGAAAA ACGCAACAAA AGACAATGAA 
    ACGACGTGAA TTAATGTCGT ATTGTGAGCT ACCGGAGTAC ATGAAAGACA 
    ACGAATACAT ATTGAATTAT TACAGAGCTG ATTGGTCCAT TAGAGATGCT 
    TTCTTCAGCG TATTTAGTTT CCACAATGAG TCCCTCAATG TTTGGACACA 
    TTTGATTGGT TTTATCTTCT TTGTGGCACT AACCGTCGCC AATATTATTC 
    ATCACGACGG ATTCTTCCCC GTGGATGCAA AGAGTCCAGG GAATGTAACA 
    AGATGGCCCT TCTTCGTTTT CTTAGGAGGC TCAATGTTCT GCCTACTCGC 
    AAGCAGCATT TGTCACCTCT TCTGTTGCCA CTCAAAAGAG CTTAATGTCT 
    TCCTTCTCCG AATAGACTAT GCCGGTATCA CCGCCATGAT CATCACTTCC 
    TTCTTCCCAC CAATCTTCTA CATCTTCCAG TGCACTCCTC GGTGGTACTT 
    CATCTACCTC GCAGGCATCA CATCCATGGG AATCTTCACA ATCATCACAC 
    TTTTCACCCC ATCACTTTCC GCTCCCAAGT ACCGAGCTTT CCGCGCTTTG 
    CTCTTTGCCT CCATGGGGCT GTTTGGGATT GTCCCAGCTG CCCACGCGCT 
    AGTGGTCAAT TGGGGAAACC CGCAAAGGAA CGTGACGCTC GTGTACGAGT 
    TGCTTATGGC AGTGTTCTAT CTTGTTGGAA CAGGATTCTA CGTAGGGAGA 
    GTGCCAGAAA GGCTTAAACC GGGATGGTTT GATCGTGTGG GACATAGTCA 
    TCAGATCTTC CATGTGTTCG TTTTGTTGGG TGCTTTGTCT CACTATGCAG 
    CTGCTCTCTT GTTCTTGGAC TGGCGTGACC ACGTTGGTTG TTAAACCATA 
    TATTTGTAAT TCTTTTAAAT ATAATATTAT TAATTTGTTG TATCGTGGTG 
    AACAAAATTG TAATAACCCA TTTGTTTTAA ATTGAATTGT AATTCAACTA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G20270.1 [+] show detail - heptahelical transmembrane protein1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hly-III related 4.2e-71
    HMMPanther ADIPONECTIN RECEPTOR-RELATED 1.2e-192
    HMMPanther Hly-III related 1.2e-192

    See the detailed result >

    AT5G20270.1

    Model type
    Protein coding
    Short Description
    heptahelical transmembrane protein1
    Curator Summary
    heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors
    Computational Description
    heptahelical transmembrane protein1 (HHP1); FUNCTIONS IN: receptor activity; INVOLVED IN: response to salt stress, response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical transmembrane protein2 (TAIR:AT4G30850.2); Has 2727 Blast hits to 2656 proteins in 794 species: Archae - 0; Bacteria - 1143; Metazoa - 823; Fungi - 356; Plants - 236; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR