F03734

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03734

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03734

Determination of introduced cDNA(s)

  • RAFL04-16-G07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-16-G07 - Resource: pda00640

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-16-G07 - full reading 
    ATCCACTATC AAATGAAAGT CTGAAGACAA ATTCTTCCAT TAGAAGAAGA 
    AGATGGCTCT TCTCTGCTTC AATTCTCTCC CTTCTCTCTC TTCTCTTTCT 
    TCTTCTTCTT CCTCGCGCCT TCTTCAATCT CCGTCTTTCG CTTCTCCAGT 
    TTTGAGCCTT AAACCCAACG CTGTCGAGTC CAAGAACAGA GTCTCTCTCA 
    GTGCTTACAG CTTGAACTCT AGCCATGGAA GAATTGTGGT GAAGGCGGCT 
    GCTTCTGGCG TGGACGGGGC TGAGCCTGAG AGCAAGGAGG AACCAAAGAC 
    TGTTGTTGCT GCTGTTCAAG TGGATAAACT ACCGTTGGAA TCGAAAGAAG 
    CTAAAGAGAA ACTGCTCTTG GAATTGAGGC TGAAGATGAA GCTGGCCAAA 
    AAGATTAGGC TACGCAGGAA ACGTCTGGTT CGTAAGCGTA AGATGAGGAA 
    GAAGGGTCGA TGGCCACCTT CCAAGATGAA GAAAAACAAG AATGTCTAAG 
    TGACTCAACT GTTTGCTGCT TTTCGTATTC GTTTTTTGTA ATGTTCTTTT 
    TGGTGTTCAA AGACCATTAA TGTACTTCAA ATGCAACCAT TGTTTTTGGA 
    TTTAACTTCA AAGCTGAGTT CTTTAAAGAA ACCATTTGT

    Gene models with high sequence identity

    1. AT3G56910.1 [+] show detail - plastid-specific 50S ribosomal protein 5
      E-value: 0; Score: 99.84

     

    InterPro Scan Digest

    See the detailed result >

    AT3G56910.1

    Model type
    Protein coding
    Short Description
    plastid-specific 50S ribosomal protein 5
    Computational Description
    plastid-specific 50S ribosomal protein 5 (PSRP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR