F03745

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03745

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03745

Determination of introduced cDNA(s)

  • RAFL05-12-O10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-O10 - Resource: pdz87472

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-12-O10 - 5 prime EST 
    GTAGTCTGAG TCTGAACCCT AAAACATCCC GCTTCGCTGC TCAGGACCAA 
    GAATCTCAGA TTCAACTGAT CTTTGCAACA TGACGAGGGT TTATGTCGGG 
    AATTTGGACC CACGCGTCAC CGAAAGAGAA CTCGAAGACG AATTCAAGGC 
    CTTCGGTGTT CTTCGCAATG TCTGGGTAGC TCGTAGACCT CCTGGCTACG 
    CATTCCTCGA GTTCGATGAC GAAAGAGATG CTTTGGATGC AATCAGCGCA 
    TTGGATCGAA AGAATGGGTG GCGTGTGGAG CTTTCTCATA AAGATAAAGG 
    AGGTCGTGGA GGTGGTGGTG GTCGTCGTGG AGGTATTGAG GATTCCAAGT 
    GCTATGAGTG TGGTGAGCTT GGACATTTTG CTCGCGAGTG TCGCCGTGGT 
    CGAGGCTCTG TGAGGCGTAG AAGCCCTAGT CCCCGTCGTC GTAGGAGTCC 
    AGATTATGGG TATGCTCGCA GGAGTATAAG CCCGCGTGGA AGAAGATCTC 
    CTCCAAGGCG TCGCAGTGTT ACTCCACCTC GCCGTGGGAG GAGCTACAGC 
    AGATCCCCTC CTTATCGTGG TTCACGCCGT GATTCTCCTC GCCGCAGAGA 
    CTCGCCCTAT GGTCGACGTT CGCCATATGC CAATGGGGTG TGAAACTGGA 
    CCCTGAAGAG AAAGAA

    Gene models with high sequence identity

    1. AT1G23860.1 [+] show detail - RS-containing zinc finger protein 21
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-12-O10 - 3 prime EST 
    GGGGTTCAAG GACGCTGTGT GAAGACAGCA GGCCAGTGCG TGTTATAGAG 
    AATAAGTCAA GACGGCTGTT GGAAAACAGC ATGAAGGAGA ACTCACCAAA 
    TCCAATTGTC TAATAAAACT CGAACATACC ATGACATGTC CATGCTCAAC 
    AACCAAACCT AGAAGAGCTA ATACCATAAT AGCAGATATA AAGATCTATC 
    CTAAAAGGCG CCACAGAGTA GATATAGCAT CATAGCTTAG TAATAGCTTC 
    TTTCTCTTCA GGGTCCAGTT TCACACCCCA TTGGCATATG GCGAACGTCG 
    ACCATAGGGC GAGTCTCTGC GGCGAGGAGA ATCACGGCGT GAACCACGAT 
    AAGGAGGGGA TCTGCTGTAG CTCCTCCCAC GGCGAGGTGG AGTAACACTG 
    CGACGCCTTG GAGGAGATCT TCTTCCACGC GGGCTTATAC TCCTGCGAGC 
    ATACCCATAA TCTGGACTCC TACGACGACG GGGACTAGGG CTTCTACGCC 
    TCACAGAGCC TCGACCACGG CGACACTCGC GAGCAAAATG TCCAAGCTCA 
    CCACACTCAT AGCACTTGGA ATCCTCAATA CCTCCACGAC GACCACCACC 
    ACCTCCACGA CCTCCTTTAT CTTTATGAGA AAGCTCCACA CGCCACCCAT 
    TCTTTCGATC CAATGCGCTG ATTGCATCCA AAGCATCTCT TTCGTCATCG

    Gene models with high sequence identity

    1. AT1G23860.2 [+] show detail - RS-containing zinc finger protein 21
      E-value: 0; Score: 100.00

    AT1G23860.1

    Model type
    Protein coding
    Short Description
    RS-containing zinc finger protein 21
    Curator Summary
    Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
    Computational Description
    RS-containing zinc finger protein 21 (RSZP21); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 6291 Blast hits to 5531 proteins in 385 species: Archae - 0; Bacteria - 201; Metazoa - 3437; Fungi - 488; Plants - 1566; Viruses - 48; Other Eukaryotes - 551 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT1G23860.2

    Model type
    Protein coding
    Short Description
    RS-containing zinc finger protein 21
    Curator Summary
    Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing.
    Computational Description
    SRZ-21; FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nuclear speck, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: serine/arginine-rich 22 (TAIR:AT4G31580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR