F03823

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03823

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F03823

Determination of introduced cDNA(s)

  • RAFL09-94-M06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-94-M06 - Resource: pda10006

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-94-M06 - full reading 
    GTATTCGCGT GAAGATAATT TCTCACAATT AGGGTTTTTT TTTTCTTCTG 
    AGTTAACTGT TCCATCTCCA TCCTAATCTT CACCTTCTCC TTGATTTCGA 
    GATCTCTGTC AATTTGTTGA ATCTGTTCTT TATCTAATTA GCTCAACTCC 
    GAGTCTTTGC TGGATTTTGA AGCTTTTGTA GCTGAAGCAA ATTTGTAATC 
    TGTGATGGTG TATGCACTGA TTCTGGGTAT GGTATTGTAC TCTAGGATCT 
    CGTAGCGAGA ATGCCAGGCA TTCCTCTTGT TAGTCGTGAA ACCTCTTCTT 
    GTTCAAGAAG CACAGAGCAG ATGTGCCATG AAGACTCCCG TCTGCGTATT 
    TCGGAAGAGG AGGAGATTGC TGCTGAAGAG AGCTTGGCTG CCTATTGCAA 
    GCCTGTTGAA CTCTACAATA TCATTCAACG CCGTGCTATT AGGAATCCCT 
    TGTTTCTTCA GCGATGTTTG CATTATAAGA TTGAGGCAAA ACATAAAAGG 
    AGAATACAAA TGACTGTATT CCTCTCGGGC GCTATAGATG CTGGGGTACA 
    AACTCAAAAA TTATTCCCTC TGTATATTTT GTTGGCAAGA CTCGTTTCTC 
    CTAAGCCTGT CGCTGAGTAT TCTGCAGTAT ATAGGTTCAG TCGAGCATGT 
    ATCCTAACTG GTGGATTGGG GGTTGATGGA GTTAGTCAAG CCCAAGCCAA 
    CTTTCTTCTC CCTGATATGA ATAGACTCGC ATTGGAGGCA AAATCAGGAT 
    CACTCGCTAT CTTGTTTATC AGCTTTGCTG GTGCGCAAAA TTCTCAATTT 
    GGCATTGATT CAGGCAAGAT TCATTCAGGA AATATAGGAG GACATTGTTT 
    ATGGAGCAAA ATACCTCTGC AATCACTGTA TGCGTCGTGG CAGAAATCAC 
    CAAACATGGA CTTGGGACAG AGAGTAGACA CAGTCTCTCT TGTTGAAATG 
    CAGCCTTGCT TCATAAAGCT AAAGTCCATG AGTGAGGAAA AGTGTGTCTC 
    GATTCAGGTG CCCAGCAATC CACTCACCTC GAGCTCTCCG CAGCAAGTGC 
    AAGTCACCAT ATCTGCAGAA GAAGTTGGGT CAACGGAAAA ATCTCCTTAT 
    AGTTCATTTT CATATAATGA CATCTCTTCC TCTTCCTTGT TGCAAATTAT 
    CAGGTTGAGA ACAGGAAATG TAGTTTTCAA CTACAGATAC TATAACAACA 
    AATTGCAGAA GACTGAAGTA ACTGAAGACT TTTCTTGTCC ATTCTGCTTA 
    GTAAAATGTG CCAGTTTCAA GGGCCTGAGA TATCACTTGC CATCAACCCA 
    CGATCTCCTC AATTTCGAGT TTTGGGTAAC TGAAGAATTT CAGGCGGTAA 
    ATGTCTCCCT CAAGACTGAG ACAATGATAT CCAAGGTTAA TGAGGATGAC 
    GTTGACCCAA AGCAGCAAAC TTTCTTTTTT TCACGGAGGA GGCAAAAGAG 
    TCAGGTACGG AGCTCAAGGC AAGGGCCTCA TCTTGGATTA GGTTGCGAGG 
    TGCTAGATAA GACTGATGAT GCTCATTCTG TTAGAAGTGA GAAGAGCCGA 
    ATACCACCTG GAAAGCATTA CGAAAGAATT GGGGGTGCTG AGTCTGGTCA 
    AAGAGTTCCT CCTGGCACGA GTCCTGCAGA CGTGCAATCA TGTGGGGATC 
    CAGATTATGT GCAGTCGATA GCTGGAAGTA CAATGTTGCA GTTTGCAAAA 
    ACGAGGAAAA TATCTATAGA ACGGTCGGAC TTGAGGAACC GAAGCCTCCT 
    TCAGAAGAGA CAGTTCTTCC ACTCTCATCG AGCTCAGCCC ATGGCTCTAG 
    AACAAGTACT TTCGGACCGG GATAGTGAAG ATGAAGTTGA TGATGATGTG 
    GCAGATTTTG AAGATAGAAG GATGCTCGAT GATTTCGTTG ATGTGACTAA 
    AGATGAGAAA CAGATGATGC ACATGTGGAA CTCGTTTGTG AGGAAGCAGC 
    GAGTATTAGC AGATGGTCAC ATTCCATGGG CATGCGAGGC ATTCTCAAGA 
    TTGCACGGAC CCATCATGGT TCGAACACCG CACTTGATTT GGTGCTGGAG 
    AGTGTTTATG GTGAAACTGT GGAACCACGG TCTTCTTGAT GCCCGAACCA 
    TGAACAACTG TAATACCTTT CTCGAACAGC TCCAAATTTG AAAACCCAAG 
    AAATCATTAA TTTAAGTA

    Gene models with high sequence identity

    1. AT5G51230.2 [+] show detail - VEFS-Box of polycomb protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Polycomb protein, VEFS-Box 1.3e-68
    HMMPanther POLYCOMB GROUP PROTEIN 1.3e-55

    See the detailed result >

    AT5G51230.2

    Model type
    Protein coding
    Short Description
    VEFS-Box of polycomb protein
    Curator Summary
    Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.
    Computational Description
    EMBRYONIC FLOWER 2 (EMF2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.1); Has 297 Blast hits to 235 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 2; Plants - 148; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR