F03934

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03934

Determination of introduced cDNA(s)

  • RAFL06-15-J24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-J24 - Resource: pda03214

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-J24 - full reading 
    ATACCGATTT CCGAACACAA CCCTAAAGAG GCTTCTTCGA CGACGTTGGT 
    TCTTTTTCCT TTGTCCTGCG CCGCGATCTC TCCTTCTCCA ACTTCCCTCG 
    TCCTGTCCAA AGAAAATGCC AAAGGTTAAA ACTAACCGAG TCAAGTACCC 
    AGAAGGATGG GAGTTGATCG AGCCTACTCT TCGAGAGCTT GATGCCAAGA 
    TGAGAGAAGC TGAGACTGAT TCACATGATG GTAAGAGAAA GTGTGAAACT 
    TTATGGCCAA TCTTCAAAGT TTCTCATCAG AGGAGTCGGT ATGTATATGA 
    CCTTTATTAC CGAAGGGAAG AAATATCTAA AGAGCTCTAT GAATTCTGCT 
    TGGACCAGGG CTATGCAGAT CGCAGTCTGA TTGCCAAATG GAAAAAGTCG 
    GGATACGAAC GTTTATGCTG CTTGCGCTGC ATACAGCCAA GAGACCACAA 
    CTATGGAACA ACATGTGTAT GCCGTGTTCC CAAACACTTG CGTGAAGAGA 
    AAGTGGTCGA ATGCGTTCAC TGCGGCTGTC AAGGATGCGC GAGTGGCGAT 
    TAAATTCAAC ATAGCTTTAT TCGCTATCTC TGACTGTTTG TTACAATCTT 
    GTCACTTGTT AAATCTGGAT TATGTATTAT TCCATAAAGG CTAAAAACCC 
    TGACTAAAAA TCT

    Gene models with high sequence identity

    1. AT4G21110.1 [+] show detail - G10 family protein
      E-value: 0; Score: 99.85

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan G10 protein 8.1e-59
    FPrintScan G10 protein 8.1e-59
    FPrintScan G10 protein 8.1e-59
    FPrintScan G10 protein 8.1e-59
    FPrintScan G10 protein 8.1e-59
    PatternScan BUD31/G10-related, conserved site 0
    HMMPanther G10 protein 5.3e-90
    HMMPfam G10 protein 1.2e-60

    See the detailed result >

    AT4G21110.1

    Model type
    Protein coding
    Short Description
    G10 family protein
    Computational Description
    G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR