F03941

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F03941

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F03941

Determination of introduced cDNA(s)

  • RAFL05-11-B17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-B17 - Resource: pda12222

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-B17 - full reading 
    GTGCAACAAC CTAACCATGG AAATTGCAAT TTGCAAACAT GGCGCTCGCG 
    CTCTCGCTGT CGGCATGTTC TCCTCCACTC CGCCGCACTC GTCGTGCCGG 
    TTTTCGAACA AGCTGCTCGA TCTTCGCGAA TCCAGCACAG CGAGCCAAGA 
    GGAAGCTGCT TGAGCTGATC TCCGAGGAGG ATCGAGGTCT GAGAACCCAG 
    AAAGACCCCA AGAAGCGAGA TGAAATCGTG AACGCCATCG AATCCATGAC 
    GGTTATCGGG CGCAGCTCCA TCACCACAGA CGACTCTCTA TCTGCCACGT 
    GGCGGCTCTT GTGGACGACG GAGAAGGAAC AGTTGTTCAT CATAGAAAAG 
    GCAGGCTTGT TTGGGACGAC CGCCGGAGAC GTTTTGCAGG TGATCGATGT 
    GAATAAACGG ATCCTCAATA ACGTCATCAC TTTCCCGCCG GACGGGGTTT 
    TCTTCGTACG CTCCGATATC GATATCGCTT CCCCGCAGAG AGTCAATTTC 
    AGATTCAATA GTGCGGTATT GAGAGGGAAG AACTGGGAGC TCCCACTGCC 
    ACCATTTGGG AAGGGCTGGT TTGAGAATGT GTATATGGAC GGTGAGATCA 
    GAGTGGCCAA GGACATCAGA GGAGACTACT TAATTGTTGA TCGTGCTCCT 
    TATAACTGGA CTGAATCATT TGTATAATTT GTGATGCTTT TTGCTTCTTG 
    TATAAGTTAT ACACCATTTC TGTCTCTCTC CTTTATCATT GGGCCTCAAA 
    TAGATGATGC AGGAATATAG GGAGGAGGAG GAAGAGGAAT TTGAAGGATC 
    ATTCAAAGTG TCATCCTTGA GTTTATTTAG GGTTTTTGTC TGTGTTTGTT 
    ACAAACACAC CACCCACATT TTCTATGCCC TTTTTTAATG TTATTTTCAC 
    AATCCATGAC TTAAAAGGCC AACACTAATC CTTTGTCTCT TATTTCATTG 
    TGAACTCACA AAGATGTTGG TGTCCGCAAG GGTAGAGAAA CAAAAGCGTG 
    TTGCTTATCA GGGGAAGGCG ACAGTGCTTG CTCTCGGTAA GGCCTTGCCG 
    AGCAATGTTG TTTCCCAGGA GAATCTCGTG GAGGAGTATC TCCGTGAAAT 
    CAAATGCGAT AACCTTTCTA TCAAAGACAA GCTGCAACAC TTGTGCAAAA 
    GCACAACTGT CAAGACACGC TACACAGTCA TGTCACGGGA GACGCTGCAC 
    AAATACCCTG AACTAGCAAC CGAGGGTTCC CCAACCATCA AACAGAGGCT 
    TGAGATTGCA AACGATGCGG TTGTGCAGAT GGCATATGAA GCGAGCTTGG 
    TTTGCATCAA GGAATGGGGA AGGGCAGTGG AAGATATCAC TCATCTTGTC 
    TACGTTTCCT CCAGTGAGTT CCGTTTGCCC GGAGGTGATC TTTACCTCTC 
    GGCACAGCTG GGCCTTAGCA ACGAGGTTCA GAGAGTGATG CTGTATTTTC 
    TTGGATGCTA TGGAGGTTTG AGTGGGCTGC GCGTGGCCAA AGACATTGCT 
    GAGAACAACC CAGGGAGCCG TGTGTTGCTC ACCACCTCTG AGACTACCGT 
    TCTGGGGTTC CGCCCACCCA ACAAAGCTCG TCCTTACAAC TTAGTCGGGG 
    CTGCACTCTT TGGAGATGGA GCAGCTGCCC TGATCATCGG AGCAGACCCT 
    ACAGAGTCGG AATCTCCTTT CATGGAGCTT CACTGTGCTA TGCAGCAGTT 
    CCTGCCCCAA ACACAGGGGG TGATCGACGG GCGGCTGTCA GAAGAGGGCA 
    TAACCTTCAA GCTAGGAAGA GACCTCCCTC AGAAGATCGA AGACAACGTG 
    GAGGAGTTCT GCAAGAAGCT AGTGGCAAAG GCTGGCTCTG GTGCGTTGGA 
    GTTGAATGAC CTTTTCTGGG CAGTTCATCC TGGTGGACCA GCCATCCTGA 
    GCGGGCTGGA GACAAAGCTG AAGCTGAAGC CGGAAAAGCT GGAATGCAGC 
    AGAAGGGCGT TGATGGATTA TGGGAACGTA AGCAGCAACA CCATCTTCTA 
    CATAATGGAC AAAGTCAGGG ATGAGCTTGA GAAGAAAGGC ACAGAGGGAG 
    AAGAGTGGGG TCTGGGCTTA GCTTTCGGAC CGGGAATCAC TTTCGAAGGC 
    TTTCTCATGA GGAACCTCTA AATGTATATG AACTGGACAT TTCTCAACAA 
    ATAAAATATA CAGGAACCGA TGCTAACACA CATACATCAT GTAATGGTTG 
    CATTAGTTTT GTTCTTTAAT GGTAAATCAC AGAAATACAT CAATACAGTA 
    AGTTTATAT

    Gene models with high sequence identity

    1. AT4G00040.1 [+] show detail - Chalcone and stilbene synthase family protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thiolase-like 1.8e-81
    HMMPIR Polyketide synthase, type III 4.6e-131
    HMMPfam Chalcone/stilbene synthase, N-terminal 5.9e-101
    HMMPfam Chalcone/stilbene synthase, C-terminal 2e-58
    HMMPfam PAP_fibrillin 8.8e-43
    Gene3D Thiolase-like, subgroup 4.2e-65
    Gene3D Thiolase-like, subgroup 1.8e-41

    See the detailed result >

    AT4G00040.1

    Model type
    Protein coding
    Short Description
    Chalcone and stilbene synthase family protein
    Computational Description
    Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR