F04007

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04007

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04007

Determination of introduced cDNA(s)

  • RAFL05-18-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-M18 - Resource: pdz87522

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-18-M18 - 3 prime EST 
    ACATAACACA AACATCTCAG AACATAAAAA GAGCCAGATG CTCATTACAC 
    ACTCATGTAA GTAAACAACA CACATCGCAG GACGTACATA CATAAAAAGC 
    ACAATACAAC GACCGAATGC GACCTGCGTT ACAAACCCTC ATTATTTTTA 
    TTTAATATGT ATACACGATT GTTCGAAGCT TAACGGCCAC CACCGGGAAG 
    CTTTTCCTTG ATCTTG

    Gene models with high sequence identity

    1. AT5G66400.2 [+] show detail - Dehydrin family protein
      E-value: 7e-115; Score: 99.54

    AT5G66400.2

    Model type
    Protein coding
    Short Description
    Dehydrin family protein
    Curator Summary
    Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.
    Computational Description
    RESPONSIVE TO ABA 18 (RAB18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cold acclimation, response to water deprivation, response to 1-Aminocyclopropane-1-carboxylic Acid, response to abscisic acid stimulus, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: dehydrin xero 1 (TAIR:AT3G50980.1); Has 55408 Blast hits to 21272 proteins in 1590 species: Archae - 46; Bacteria - 19188; Metazoa - 16568; Fungi - 3087; Plants - 7219; Viruses - 590; Other Eukaryotes - 8710 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR