F04038

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04038

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04038

Determination of introduced cDNA(s)

  • RAFL09-67-O03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-O03 - Resource: pda08678

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-O03 - full reading 
    AAATGGACCA AATTTGTGGC TACTACTCTC CTCAATTATA AAAATGAAAT 
    ATTTATATAT CTTCCCTGAA CCAGGAAGAT ATTTTGTTTG TCTTCTACAA 
    ATATTATATA TATGTAATTT CTTTGGATAA TTTTCTACCG CTTAAGAAGC 
    ACAGATGGAC ATAATCTCAG GGCAAGCTCT GTTACTCCTC TTTTGCTTTA 
    TCTTATCATG TTTTCTTATC TTCACCACCA CAAGATCTGG ACGAATCTCC 
    CGCGGGGCCA CCGCGCTGCC TCCAGGACCT CCACGGTTAC CGATCATCGG 
    AAATATTCAC CTCGTCGGAA AACATCCACA TCGCTCATTC GCCGAGCTCT 
    CAAAAACTTA TGGACCAGTC ATGAGTCTTA AGCTTGGAAG TTTAAATACA 
    GTGGTTATAG CTTCACCAGA AGCTGCGAGA GAGGTTTTAC GAACACATGA 
    CCAGATTTTG TCTGCCCGTA GTCCCACTAA CGCGGTACGG TCCATCAATC 
    ACCAAGACGC TTCCCTTGTC TGGCTTCCTT CGTCGTCCGC TCGTTGGAGG 
    CTGTTGAGAA GGCTGTCGGT GACTCAGCTC TTGTCACCAC AGCGTATCGA 
    AGCCACGAAA GCCTTGAGGA TGAACAAGGT GAAGGAACTT GTGAGCTTCA 
    TAAGTGAAAG CAGCGATAGG GAAGAATCTG TTGATATTTC TCGTGTAGCC 
    TTCATCACAA CTCTTAATAT CATATCGAAC ATTCTGTTTT CCGTCGATCT 
    CGGTAGCTAC AACGCGAAAG CTTCTATTAA TGGGGTTCAA GACACGGTGA 
    TTAGTGTTAT GGATGCTGCC GGGACTCCAG ACGCTGCTAA TTACTTTCCA 
    TTTCTGAGGT TTCTTGATCT GCAAGGTAAT GTGAAGACTT TTAAGGTTTG 
    CACGGAGAGG CTGGTAAGGG TTTTCCGTGG GTTCATTGAT GCTAAGATTG 
    CGGAAAAATC ATCGCAGAAT AACCCTAAAG ATGTTTCAAA AAACGATTTC 
    GTTGACAACC TTCTCGATTA CAAAGGAGAT GAATCAGAAC TCTCCATTAG 
    CGATATTGAA CACCTTCTCT TGGATATGTT TACAGCAGGC ACGGATACAA 
    GCTCTAGTAC CCTGGAGTGG GCAATGACAG AGTTACTTAA AAACCCTAAA 
    ACGATGGCGA AAGCTCAGGC CGAGATCGAT TGTGTGATAG GTCAAAACGG 
    TATCGTTGAA GAGTCAGATA TCTCCAAACT GCCGTATTTA CAAGCAGTCG 
    TGAAGGAAAC TTTCCGGTTA CATACGCCTG TTCCGCTTCT TATCCCGCGA 
    AAAGCCGAAT CCGATGCGGA GATTCTTGGT TTCATGGTGC TTAAAGATAC 
    TCAGGTTCTA GTGAACGTCT GGGCCATAGG ACGAGACCCG AGCGTGTGGG 
    ATAATCCGTC CCAGTTTGAG CCAGAGAGGT TTTTGGGGAA AGATATGGAC 
    GTGAGAGGTA GAGATTATGA GCTTACACCA TTCGGAGCCG GACGTAGAAT 
    TTGCCCGGGA ATGCCTTTGG CTATGAAAAC AGTGTCTCTT ATGCTTGCTT 
    CTCTTCTTTA TTCCTTTGAC TGGAAGCTTC CGAAGGGTGT CCTTTCGGAG 
    GATTTGGACA TGGACGAGAC CTTTGGTCTA ACTTTGCATA AGACCAACCC 
    GTTACATGCC GTACCCGTCA AGAAACGCGC CAATATTAAT TAGTCGTGGT 
    TTTATAATTA AAAATAAACA GAGAAATAAT CTCCAAAGCT TTGTTTATTA 
    CCAAAAACTA TCTGTTTTCG GTTCTAGAGT TTGTTTGTTT CTCTCTCTTG 
    AGGTGGCTAG AGCTTGAAGA AGTCAAAAGT ATCCATATTG ATGCCAAAT

    Gene models with high sequence identity

    1. AT2G45560.1 [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYTOCHROME P450 SUBFAMILY 76C 7.5e-285
    HMMPanther Cytochrome P450 7.5e-285
    superfamily Cytochrome P450 4e-130
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, E-class, group I 4.2e-53
    FPrintScan Cytochrome P450, C-terminal 3e-12
    FPrintScan Cytochrome P450, C-terminal 3e-12
    FPrintScan Cytochrome P450, C-terminal 3e-12
    FPrintScan Cytochrome P450, C-terminal 3e-12
    HMMPfam Cytochrome P450 2.6e-108
    PatternScan Cytochrome P450, conserved site 0
    Gene3D Cytochrome P450 1.5e-125

    See the detailed result >

    AT2G45560.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 76, subfamily C, polypeptide 1
    Curator Summary
    cytochrome P450 monooxygenase
    Computational Description
    "cytochrome P450, family 76, subfamily C, polypeptide 1" (CYP76C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 35149 Blast hits to 34841 proteins in 1748 species: Archae - 60; Bacteria - 4538; Metazoa - 12163; Fungi - 7375; Plants - 9565; Viruses - 6; Other Eukaryotes - 1442 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR