F04046

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04046

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04046

Determination of introduced cDNA(s)

  • RAFL09-20-M23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-20-M23 - Resource: pda05590

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-20-M23 - full reading 
    AAAGCCCTAA AAATCAGAGA TTCCATTTTC TCTTATCTCT CTCTCTCTCT 
    TTCTCTTTTT CCGATTCTGA TTCTATTTTT TCTTCACCAA CCACACAAAA 
    CAATTCTACG TTTGATCTCT TCTTCTTTCT CCGTCCAAAT TAATCTCTAC 
    GTTTAATTTC TCTTGTTCAA TCATGGGACA CGAAACAATG ACGCCGGCAA 
    CAACAACGCT CGTGTTCACG TACGGAACTC TAAAGAGAGG ATTCTCAAAT 
    CATGTCCTGA TGCAAGATCT GATCCGATCT GGTGACGCTT CTTTCAAAGG 
    TGTTTACCAA ACTCTAGACA AATATCCTCT CGTCTGTGGA CCTTACCGAG 
    TCCCTTTCCT CCTCAACAAA CCTGGATCGG GCTATCACGT CAACGGCGAG 
    CTTTACGCGG TTTCTCCTCG CGGTCTCTCT CGTCTCGACG AGCTCGAAGG 
    AATCAGTCGC GGTCATTACA TCCGGCAACC GATACGTCTC GCGGCGGCGG 
    AGGAAGAAGA AGAAGAAGAA GGAGATCTGG AAACAGAGGC GCCGTCGTCG 
    TGCGTGGTGG AGGCGTATTA CGCTCATAAG AGTTATGAGG AAGAGCTGTG 
    GAGGAGGAAT AGAGGAAGAT CATTCGGCGC GTACACGGAA AACGAAGCGC 
    GTGGATATGT GAAACGCAAT GATAGGCCTC AGCATCTTAG CTTCTTGGAT 
    CATATCCGTA TTTTCGTATC TTCTCCATGT GATTGATTTT TATTTCTTTC 
    GTGGTCTCTC CCGCTCGTCG CTTTTCTATG TTTGTTTGTT TTTTTCTCGG 
    GACAAAAGAA ACAAAAAAAA AAACACAAAC ACAAACTAGT TTTACAACTT 
    GTAAGGGTCC CACCAGTCCG TCCGTCCGTC GTCTCCGTAT CGATTTGATT 
    AGAGAGATTG TTGGGTGTAA AACTTATGAT TCCCATCTTA AATAAGTTTT 
    AGGTTGTTTT TGAGTTTATG GTTAATTTTC CAGTTAAAAA C

    Gene models with high sequence identity

    1. AT3G02910.1 [+] show detail - AIG2-like (avirulence induced gene) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam AIG2-like 4.8e-15
    superfamily BtrG-like (Pfam 03674) 1.5e-25
    HMMPanther TROPONIN C-AKIN-1 PROTEIN 5.1e-62
    Gene3D Butirosin biosynthesis, BtrG-like 1.3e-34

    See the detailed result >

    AT3G02910.1

    Model type
    Protein coding
    Short Description
    AIG2-like (avirulence induced gene) family protein
    Computational Description
    AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT5G46720.1); Has 320 Blast hits to 319 proteins in 102 species: Archae - 4; Bacteria - 64; Metazoa - 146; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR