F04108

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04108

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04108

Determination of introduced cDNA(s)

RAFL09-22-A22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-A22 - Resource: pda05615

full reading [+] show sequence

AAACCACAGA GAGAAAGCCT CCGTCTCCCT TATCAAAGAA GAAGAAGACG 
TGTATAACAA AACACTAGAC ACATTGTGAA GATAGAAAAA AATGGAGAGA 
GCAGCAATTC TCCCGAGTGT TAATCAAAAT TACCTACTTT GTCCTTCACG 
CGCCTTCTCC ACGCGCCTCC ACTCCTCTAC TCGTAACTTA TCGCCGCCGT 
CATTTGCCTC CATCAAGCTT CAGCATTCTT CTTCCTCTGT TTCTTCTAAT 
GGTGGAATCT CTCTTACTCG ATGCAACGCT GTTTCGTCCA ATTCTTCCAG 
TACGTTGGTA ACTGAATTAG CCGACATAGA TTGGGATACC GTTGGATTTG 
GGCTTAAGCC AGCTGATTAT ATGTATGTGA TGAAATGTAA CATTGATGGA 
GAGTTCTCAA AAGGTGAGTT GCAACGTTTT GGGAATATTG AAATTAGCCC 
ATCTGCTGGT GTACTCAACT ATGGACAGGG ATTGTTTGAA GGGCTAAAAG 
CTTACAGAAA GAAAGATGGT AATAACATCC TCCTCTTTCG TCCTGAGGAG 
AATGCAAAGC GTATGAGAAA TGGTGCTGAG AGGATGTGTA TGCCTGCTCC 
AACCGTTGAG CAGTTTGTAG AAGCTGTGAC AGAAACTGTA CTAGCAAACA 
AACGTTGGGT TCCACCACCA GGTAAAGGTT CCTTATATGT TAGACCATTG 
CTAATGGGAA CAGGAGCTGT TCTTGGTCTT GCGCCTGCAC CAGAATATAC 
TTTCATTATC TATGTTTCGC CTGTTGGGAA CTACTTCAAG GAAGGTGTGG 
CACCTATCAA TTTGATTGTG GAGAATGAAT TTCACCGTGC AACTCCTGGT 
GGTACCGGAG GTGTTAAAAC CATAGGCAAT TATGCTGCAG TACTGAAGGC 
ACAGTCAATT GCGAAAGCTA AAGGATATTC CGATGTTTTG TACCTTGATT 
GCATTTACAA AAGATATCTT GAGGAGGTCT CGTCTTGCAA TATTTTCATC 
GTGAAGGACA ATGTGATATC TACTCCTGAA ATAAAAGGAA CCATTTTACC 
CGGTATTACT CGAAAAAGTA TGATAGACGT GGCTCGAACA CAAGGGTTTC 
AGGTGGAGGA ACGGAATGTG ACAGTGGATG AATTGTTAGA AGCAGACGAG 
GTTTTCTGCA CAGGAACCGC CGTGGTTGTC TCTCCTGTTG GAAGCGTCAC 
TTACAAAGGC AAAAGAGTGT CTTACGGAGA AGGTACCTTC GGAACTGTGT 
CGAAGCAACT CTACACCGTT CTGACAAGCT TGCAGATGGG TCTGATTGAA 
GACAACATGA AATGGACTGT GAATCTTAGT TAAGCCAGGC GAATGCATTG 
CATCAATTCG GCTGCTTGGT TTTGCTTTCT TTTCTTTGGT CTGTGGTTCT 
GATTCGTGAA ACTATGAGTT GGATTGTTTA GAATCTGGTT GATCTAGAAC 
TTAGCTGGTT CAAGATCATT AGATGTTGTT GCATCATACC AATAATATTA 
TCTTTAGATC T

Gene models with high sequence identity

AT3G49680.1 [+] show detail - branched-chain aminotransferase 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.2e-57
Gene3D	no description	2.5e-34
HMMPIR	Branched-chain amino acid aminotransferase II	6.8e-168
HMMPfam	Aminotransferase, class IV	6.2e-32
HMMPanther	Branched-chain amino acid aminotransferase II	5.4e-176
HMMPanther	Aminotransferase, class IV	5.4e-176
HMMTigr	Branched-chain amino acid aminotransferase II	4.1e-127
superfamily	Aminotransferase, class IV	6.7e-113
PatternScan	Aminotransferase, class IV, conserved site	0

See the detailed result >

AT3G49680.1

Model type: Protein coding
Short Description: branched-chain aminotransferase 3
Curator Summary: Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.
Computational Description: branched-chain aminotransferase 3 (BCAT3); FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; INVOLVED IN: branched chain family amino acid metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Aminotransferase, class IV, conserved site (InterPro:IPR018300), Branched-chain amino acid aminotransferase II (InterPro:IPR005786); BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.1); Has 12479 Blast hits to 12479 proteins in 2523 species: Archae - 154; Bacteria - 7638; Metazoa - 266; Fungi - 416; Plants - 252; Viruses - 0; Other Eukaryotes - 3753 (source: NCBI BLink).
Link: InterPro Scan - TAIR