F04126

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04126

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04126

Determination of introduced cDNA(s)

RAFL09-68-F06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-F06 - Resource: pda06614

full reading [+] show sequence

AGAATCACAC AAGCTTCACA ATGTCATCAT CATCATCAAC GACGACGAAC 
ACAACAACAG AATCAGATTC ATCATCTCTA CCTACTCACA TCGGTAGATC 
AAATTCCGAC GGAATCATCG ACACTACACC ATTTCTTCCT CCCACCGTTA 
CAAGAACCAT AAGCGTAGAT GAAGAATCCA ATCCAATTCA TCGATCCGCT 
AGACGACAAG GTCTAAGAGA AGCAGCGAGG TTCCTCCGTC ACGCTGGTAG 
CCGGAGAATG ATGCGTGAAC CATCGATGCT CGTTAGAGAA ACCGCTGCTG 
AGCAATTAGA AGAGAGACAA AGTGATTGGG CGTATTCTAA ACCTGTGGTG 
TTTCTTGACA TTTTGTGGAA TCTTGCTTTT GTTGCCATCG GTGTTGCTGT 
TCTGATACTT AGCCGTGACG AGAAGCCTAA TATGCCGTTG AGAGTTTGGG 
TTGTTGGTTA TGGGATTCAA TGTTGGTTAC ATATGGCTTG TGTTTGTGTT 
GAGTATAGGC GGAGGAGACG ACGACGTCAC CCGGAGGATG GTGGTGGTTC 
TGGGTTGACG AATTCTTCGT CGCAGCAATA TGTTTCGTTA GCGCAATTGG 
AGGATAGAGG AGAGACTAGT AATCCTGCGA AGCATCTTGA ATCAGCCAAT 
ACGATGTTCT CATTCATCTG GTGGATAATT GGATTCTACT GGGTTTCTGC 
AGGAGGCCAA ACACTATCTA GTGACTCTCC TCAGCTCTAT TGGCTGTGTA 
TCATTTTTCT CGGTTTCGAT GTTTTCTTTG TTGTGTTCTG TGTTGCATTG 
GCTTGTGTTA TCGGCCTTGC TGTTTGCTGT TGTCTTCCAT GTATAATTGC 
AATTCTATAT GCTGTTGCCG ACCAGGAGGG AGCATCGAAG AACGACATAG 
ATCAAATGCC GAAATTCAGA TTTACAAAAA CTGGCAATGT TGAAAAGCTC 
TCAGGCAAAG CACGGGGAAT AATGACGGAA TGTGGAACAG ATTCACCTAT 
TGAACGCTCG CTCTCTCCAG AAGACGCGGA ATGCTGCATC TGTCTCTGTG 
AATATGAAGA TGGAGTTGAA CTTAGAGAAC TCCCTTGTAA CCATCACTTT 
CATTGCACTT GCATCGATAA ATGGCTTCAT ATAAACTCAC GTTGCCCGCT 
CTGCAAGTTT AACATCTTGA AGAACGCAAA CAACGAAGTC TAGTAAAATC 
TGTTCTGGTT CTAGGATCAA TCCGAACGAA CCATCCCAGA CCAGAACGTT 
TCAGATATAT GTAAACTCTG GTTCGTGTTT TAGTGTTGTG CAGTTAGAAA 
CTCTAGTCCA TATCTCTTTC TCCTGATCTT CTATTACAAT GCGTCAATGC 
GCCTATTGAT AGTATGTAGG AATAAATCGT TGGATTAGTC CTACTTTATT 
TTTT

Gene models with high sequence identity

AT4G11680.1 [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
E-value: 0; Score: 99.93

InterPro Scan Digest

Program	Description	E-value
HMMPanther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT	2.6e-26
HMMPanther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT	2.6e-26
superfamily	RING/U-box	1.2e-13
ProfileScan	Zinc finger, RING-type	12.12
HMMSmart	Zinc finger, RING-type	3.3e-05
HMMPfam	Zinc finger, C3HC4 RING-type	2.4e-05
Gene3D	no description	1.3e-11

See the detailed result >

AT4G11680.1

Model type: Protein coding
Short Description: Zinc finger, C3HC4 type (RING finger) family protein
Computational Description: Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR