F04223

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04223

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04223

Determination of introduced cDNA(s)

  • RAFL05-21-I22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-I22 - Resource: pda01338

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-21-I22 - full reading 
    TCCTCGATTT CAATCTTTGA GATAAACCAC AAAGATCCTC CGATTCGAAG 
    GTTTATAAAA ACTCAAAATC GAATCTTATC CACAAGAAAA CAACAAGGTA 
    CTTTTCCAAA AATGAAGGCG GAGTTGAATT TGCCGGCGGG ATTCCGATTT 
    CATCCGACGG ACGAAGAGCT TGTCAAGTTC TATCTTTGCC GGAGATGTGC 
    GTCAGAACCG ATTAACGTTC CGGTTATCGC AGAGATTGAC TTGTACAAAT 
    TCAATCCAAG GGAGCTTCCA GAAATGGCGT TGTACGGTGA GAAAGAATGG 
    TACTTCTTCT CGCATAGAGA CCGGAAATAC CCAAACGGGT CGAGACCAAA 
    CCGGGCAGCT GGAACCGGTT ATTGGAAAGC GACTGGAGCT GATAAACCGA 
    TCGGAAAACC GAAGACGTTA GGGATTAAGA AAGCACTCGT CTTCTACGCA 
    GGAAAAGCTC CGAAAGGGAT TAAAACGAAT TGGATTATGC ACGAGTATCG 
    TCTCGCTAAT GTCGATCGAT CTGCTTCTAC CAACAAGAAG AACAACTTAA 
    GACTTGATGA TTGGGTTTTG TGTCGGATAT ACAATAAGAA AGGAACAATG 
    GAGAAGTATT TACCGGCGGC GGCTGAGAAA CCGACGGAAA AGATGAGTAC 
    GTCGGACTCA AGATGCTCAA GTCACGTGAT TTCACCGGAC GTCACGTGTT 
    CTGATAACTG GGAGGTTGAG AGTGAGCCCA AATGGATTAA TCTGGAAGAC 
    GCGTTAGAGG CATTTAATGA TGACACGTCC ATGTTTAGTT CCATTGGTTT 
    GTTGCAAAAT GACGCCTTTG TTCCTCAGTT TCAGTACCAG TCCTCCGATT 
    TCGTCGATTC GTTTCAGGAC CCGTTCGAGC AGAAACCGTT CTTGAATTGG 
    AATTTTGCTC CTCAAGGGTA AAAATAATCG GCAAAAAGTT GAAGCTTTTC 
    AGAGTCTTCG ATCACCGGCA TTGTGTCGGA TCCTGACCCG GAGACCAAGT 
    CGGGTCATAC GATTACATAA TCGGGTTATT GAGATTTCCA CATTTGGATT 
    TCCGAGACTA ACCAACTTAA CGGATTCTGG GGTAATTGGG GGGTTTTGCA 
    CAGGTGAATC ACACTGAGTC AGCAAGTTTC GATTTTTTGG TTTTGTTTTG 
    TAATGATTGA TTAAATGTCT AAAGATATCA CGAAGTTAAA AAAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT5G63790.1 [+] show detail - NAC domain containing protein 102
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    superfamily No apical meristem (NAM) protein 5.6e-62
    HMMPfam No apical meristem (NAM) protein 2e-48
    ProfileScan No apical meristem (NAM) protein 57.55

    See the detailed result >

    AT5G63790.1

    Model type
    Protein coding
    Short Description
    NAC domain containing protein 102
    Curator Summary
    Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.
    Computational Description
    NAC domain containing protein 102 (NAC102); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT5G08790.1); Has 3012 Blast hits to 3006 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3012; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR