F04532

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04532

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04532

Determination of introduced cDNA(s)

  • RAFL09-50-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-D16 - Resource: pda06444

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-D16 - full reading
    ATAAAAAGCC TAACGAAGAA GACGAAGAAG AAGAGGAACA AACAACCATG 
    GGTGAAGTGG TTAAGGATGG AAGAGAAGAA GTGATCCAGG CATGGTATAT
    GGATGATAGC GAAGAGGATC AGAGACTTCC TCACCACAAG GATCCTAAGG
    AGTTTCTATC TTTGGACAAA CTTGCAGAGC TGGGAGTACT TAGCTGGAGA
    CTTGATGCTG ATAACTATGA AACCGATGAG GATTTGAAAA AGATCCGCGA
    ATCTCGTGGT TACTCTTACA TGGACTTTTG TGAGGTATGC CCGGAAAAGC
    TTCCAAACTA TGAAGTGAAA GTGAAGAGCT TTTTCGAAGA ACATTTGCAC
    ACTGATGAAG AGATCCGTTA CTGCGTTGCA GGAAGCGGTT ACTTTGATGT
    GAGGGATCGC AATGAAGCTT GGATTAGAGT ATGGGTAAAG AAGGGAGGTA
    TGATAGTCTT ACCTGCTGGA ATATATCATC GCTTCACCGT AGACTCAGAC
    AACTATATCA AGGCAATGCG GCTTTTCGTG GGTGAACCGG TCTGGACACC
    ATACAATCGC CCACACGACC ACCTCCCTGC AAGGAAAGAG TACATCGATA
    ATTTCGTGAA GGTGAATGAA GGTGGTGTCA TAGACGCGTC AGCCTAGAGG
    ATTCTCAGTC TTATGCATCA GATTTCTATA AACTAAGCAT ACAATAAAGA
    GAGCTTTCTG TCTCATGTTG GATATTATGT CATCTACAGA TCCACTTGTG
    AAGAAACTTT GATTCGTGTG GCTTTGGCAT TATGGTTGTG TTGTAACTGT
    ATTTATAGTT TATACTCCAG AAATCAAACT GTGTTACATT

    Gene models with high sequence identity

    1. AT4G14710.2 [+] show detail - RmlC-like cupins superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Acireductone dioxygenase, ARD 5e-69
    HMMPanther Acireductone dioxygenase, ARD 1.8e-96
    Gene3D RmlC-like jelly roll fold 3.8e-75
    superfamily Cupin, RmlC-type 2e-45

    See the detailed result >

    AT4G14710.2

    Model type
    Protein coding
    Short Description
    RmlC-like cupins superfamily protein
    Computational Description
    ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: oxidation reduction, L-methionine salvage from methylthioadenosine; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase 1 (TAIR:AT4G14716.1); Has 1544 Blast hits to 1537 proteins in 521 species: Archae - 0; Bacteria - 702; Metazoa - 158; Fungi - 135; Plants - 464; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR