F04835

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F04835

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F04835

Determination of introduced cDNA(s)

  • RAFL09-68-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-C24 - Resource: pda06609

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-C24 - full reading
    AGTCAGATAT AAATTAGGGT TTCAGATTTT TTAGATTTTA TCTCTTCAAT 
    TCGAGCCAGT GAATTGCCGC CTCCTCCTCC TCCTCTTCTT CCCTCAATAC
    ATAACCAAAG CAATGAAATT CTACTTGTAT CCTGTAATGG CTGACTAAAT
    CAACTGCGAA TCGTGTTTTG TGACATGGTT ACTGTTGCTA GGCTATTGAA
    CCTCACTCTT GTTGTTCCCG AGATTGACAA AACATCCTTC TTTGCTGATT
    CAAGGTTTTG TGTTCTGTCA CCATCTCTTA GACCCCTTCT ACGTTACGCT
    TTCCTGAGAG AAGTAAAGGT CTGGTTGTGC AGTGAACATG GGGGCTCTTG
    CTCAAGTTGT TCCGTGGATA CCCGAAGACG ACCTGCTGCT AAAGAATGCT
    GTCGAGGCTG GTGCTTCTTT GGAATCGCTT GCTAAAGGTG CTGTGCAGTT
    TTCTAGAAGA TTTTCTATTA GAGAATTGCA AGATCGATGG CATGCACTGC
    TTTATGATCC AGTAGTTTCT GTAGAGGCGG CTTTTCGGAT GGCTGAGCTT
    GAACGTACTA ACCCTAATTT TCCTACTAAG TTTGGTAGAA CTGGATATTC
    AAAAGAAAAC AAAAGTTCAT CTAGGAAGAG GAATGCTGAA AGGCTCAGAA
    GTACTTATCA TTCCTTGCGG AAGAAATTTA GGACTGAGCC ATTCAATTCC
    TTGGATCTAG GTTTCCTCGT TCCACCAAAT GATAGCCATT TCATGGATAA
    TGGTGATGCA ACACATCTTG GTCTTGAGGA CTCTCACATG GATATTATCC
    ACAACGCGTT TCCAGAAATC TTGGCTGAAG GTGGTTGCGT GACAACTCAT
    GTTCTGCCAG AAGATAATTT ACAGGGAGAC ATTCCTTACG TAGAAGGAGA
    AAATCTCACA TTCACTGAAC ACGCAGGTCT ATCAGTATGT GATGTGGTTC
    ATCAAGATTC CGAGCAGAAA CTAGAGAATA CTGCTCACGA GGCAAAAAAC
    ACAATGGCTA GCACTGATTT CCTGGCACAG CTTTCAACTT CTCTTTTCGA
    AGAAGACATG GAACCGTTCA TGGAAGTAGA TGGCAAAGAA GTTGACAAGT
    CATATTATGA TGGTCTTAGC TCACTGTTGG TGAACTCTAC AAATGATACA
    AACCGCGAGG CTTTTCCTAA CCCCACCGAG CAAGAACCTT CCATTGCACC
    AACTCATCCA GGAGAGGCAA CCCTGGATGA TCATGTGATG CTTGAGCTAG
    ATGGTACAAT CGCTTTAGAT CCTCATCCTG AGATTGTTGG GGGTGTAATC
    TGCTGTTTAT TAAACGAAGA GGATCCTGAT ATTCCGTGTA ATGATGACAT
    TTTCCTGTCC AACAACTCCC GTCCGATGTC AGTTTCTTCT TTAGCCCGGC
    GGAACTTTAA GGATACCAAT AGTCCAATAA CTACATGTGT AAGAGACGTC
    TCCGCCAGTA AGGAAAAAAG TGAGGGATAT TCACTCCAGG CTCAAAAGAA
    AAAACCAGGA CGTTTACAGG GGTCTACTCA AGGAAAGCCA GAGATGGGCC
    AACCAAGTAA AGGTAGCAAA TTCAGGGCAT CGACTAGTAC TGAGTTAAAG
    AATACTGTAG CTCCTGGTGG TTCTTCCTCT GCACAGGCTT GCTCTAATAC
    TCTACTTTCT ACTGGTACCG GTGCAAAAGA TGGAAAGAAA GAAACTGCTA
    CTGGAACACT CTTTGTCGGA TCTGATGGCC ATGGCAACCA CCCAGAGAAG
    GATAGTGAAA ATTGTAAAGA GAAAAATGTT GTACCACCTG TTAATGAATC
    GCCACATGCT AAAGATACTG ATGATGGCTT GATAGAGATT ACAGTCCCTG
    AGCTGGAGAT CACCCGTGCA GAAGCAGAAG CAGAAGCAGA AGCGCATGTT
    TGTGAGAGTG ATGAGGACTT ACCCAATTAT TCTGACATTG AGGCTATGAT
    ACTTGACATG GACTTGGAAC CTGATGATCA AGATAATTTT GATCTCGAAG
    TCTCCAAGTA TCAGAGCCAA GACATGAAAA GAACAATCAT AAGACTTGAG
    CAGGCTGCTC ATTCATATAT GCAAAGAGCC ATTGCTTCCC GTGGTGCATT
    CGCTGTTTTA TATGGCAGAT ATTCAAAACA CTATATCAAG AAGCCTGAGG
    TTTTGGTGGG TAGATCAACA GAAGACCTCG CTGTGGACAT TGATTTGGGA
    AGAGAAAAGC GGGGTAGCAA AATATCTCGA CGACAGGCGA TCATACGGCT
    GGGTGATGAC GGTTCGTTTC ATATAAAAAA CCTGGGGAAG TATTCAATCT
    CAGTAAATGA GAAGGAAGTA GATCCTGGAC AGAGTTTAAT CCTCAAATCC
    GATTGTCTAG TTGAGATACG GGGAATGCCT TTTATATTTG AAACAAACCA
    AAGTTGCATG CAAGAGTACC TGAAGAGAAG AGGGAAAGTG AACTGAGACC
    AGATCAAGAG TGCGTGTTGT TTGTGTAGAT GAATGATGCA TCTCTTGTGT
    AATGTACCTT AGCCATAGGA ACACGTCTTG TAGATCTTTT AATACATCTT
    TAGTTCCGCA TCATGCATAG TTGACCCTGT TTTAAGGCGT TGAAATGAAA
    ATACAAGTCT CTTGTATCTG AATTTGTGTT TTAAGCGAAG AATGATTGTT
    CTTGTGAAAA G

    Gene models with high sequence identity

    1. AT3G54350.1 [+] show detail - Forkhead-associated (FHA) domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Forkhead-associated (FHA) domain 9.674
    HMMSmart Forkhead-associated (FHA) domain 0.00041
    superfamily SMAD/FHA domain 0.000000000022
    HMMPfam GDP-fucose protein O-fucosyltransferase 0.0000000023
    HMMPfam Forkhead-associated (FHA) domain 0.00000021
    HMMPanther MICROSPHERULE PROTEIN 1 8.9e-98

    See the detailed result >

    AT3G54350.1

    Model type
    Protein coding
    Short Description
    Forkhead-associated (FHA) domain-containing protein
    Computational Description
    embryo defective 1967 (emb1967); CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR