F05235

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05235

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05235

Determination of introduced cDNA(s)

  • RAFL06-68-M20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-68-M20 - Resource: pda07624

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-68-M20 - full reading 
    CGGATAAGAT CTTCAACCCT GACATATCTG CGAACTTTTA TGTATAGGCA 
    TACTTTCATC CTCACTCATG AAGATAAACA AAAAATCTGG AAAACAGTGG 
    AAAAGCTCCT TGTTGACAGC CAAGTAGAGG TACGAGAGCA TGCAGCAGCA 
    GTTCTAGCAG GCCTAATGAA AGGAGGAGAT GAAGATTTTG CTGCAGATTT 
    TCGTGATAGA TCCTATGCAG AGGCAAACTC AATCCAAAAG AGAAGAAATC 
    GGAGGAAATC AAGTTCAACT CAGTCCATTG CGGGGGTGCA TGGAGCCGTT 
    CTTGGTTTGG TAGCTTCAGT TTTGTCTGTT CCTTATGACA TGCCCAGCTG 
    GCTGCCGGAG CATGTGACCT TACTGGCTCG GTTCGCGGGT GAACCTACAC 
    CTATAAAATC GACTGTGACT AAAGCAGTGG CTGAGTTCCG GCGAACCCAT 
    GCGGATACAT GGAACATCCA GAAAGACTCA TTCACCGAAG ATCAGCTTGA 
    GATCTTGGCC GATACATCTT CCTCTTCCTC GTACTTTGCT TGATTAATGT 
    CGAGGAACTG AGTCTCGTCA AAAGACGATA ATACTAAAGT AACTCCACCT 
    TTTATTGATT TTTAATTTTG TGCCAAAATA GATGTAATAA TAATAACATG 
    AAAGTTATAA AACCATGGTT TCGGTTTATA TATCACAGTG AAAGTTAGAG 
    AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G13330.1 [+] show detail - proteasome activating protein 200
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G13330.1

    Model type
    Protein coding
    Short Description
    proteasome activating protein 200
    Curator Summary
    Encodes a protein that interacts with the 26S proteasome. Mutants are phenotypically indistinguishable from wild type plants under a variety of growth conditions. Protein levels increase upon exposure of seedlings to MG132, a specific, potent, reversible, and cell-permeable proteasome inhibitor.
    Computational Description
    proteasome activating protein 200 (PA200); FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3437 (InterPro:IPR021843), Armadillo-type fold (InterPro:IPR016024); Has 512 Blast hits to 355 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 262; Plants - 57; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR