F05308

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05308

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • dark green (PATO:0001249)
    (Stem::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05308

Determination of introduced cDNA(s)

  • RAFL06-08-A17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-A17 - Resource: pda12245

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-A17 - full reading
    ACACACACTT CTCACTTAAG AAAATGAATA ACTCTTTACA AAGTTCTAAA 
    CTTGTGCTTC TATTGGCTAT TGCTTTGGTC CTATTTCTTA ACACGGAGCT
    GGATTTTCTT ACAGCTGCTG GAGCCTTAGA CAGTGATAGC AAAGTTTATA
    TAGTGTATCT TGGCGAAAGA GAACACGATG ATCCTGAACT TGTCACAGCT
    TCTCATCACC AGATGCTTGA ATCACTTCTT CAAAGCAAAG AAGACGCACA
    AAACTCCCTG ATCTACAGCT ACCAACATGG ATTCTCTGGT TTCGCGGCGC
    TTCTTACATC ATCACAAGCT AAGAAAATTT CAGAGCATCC AGAAGTTATC
    CATGTTATAC CAAACCGGAT TCGGAAACTT AAAACCACAA GAGCTTGGGA
    TCACCTTGGC CTCTCTCCAA TTCCAACTTC TTTTTCTTCA TTATCATCTG
    TAAAAGGTCT TCTTCATGAC ACCAACTTGG GCAGTGAAGC TATCATCGGT
    GTCATTGATT CCGGGATATG GCCAGAGTCA AAGGCAGTCA ACGATCAAGG
    CCTTGGACCA ATACCTAAGC GTTGGAGAGG AAAATGTGAA CCTGGAGAAC
    AGTTTAACGC CACAATACAT TGCAACAACA AGCTAATAGG AGCTAGGTAC
    TATCTAAACG GTGTAGTCGC CGCAATTGGA GGAAAATTCA ACAGAACAAT
    CATCCAAGAT TTCCAATCCA CCAGAGATGC AAACGGTCAC GGTACACATA
    CAGCCACAAT AGCTGGTGGC TCATTTGTCC CCAACGTGAG CTACTTTGGT
    TTAGCCCAAG GTCTTGTCCG AGGTGGTGCT CCTCGAGCCC GAATAGCCTC
    GTACAAGGCG TGTTGGAACG TAATGAGAGA TGAAGGAGGA GGAACTGATG
    GAAGATGCAC ATCTGCTGAT ATGTGGAAGG CTTTTGATGA TGCTATACAT
    GATGGGGTTG ATGTTTTGTC GGTTTCTATC GGGGGAGGTA TTCCCGAGGA
    TTCGGAAGTC GATAAGCTCG ATTATATCGC GGCTTTTCAC GCGGTGGCTA
    AAGGGATTAC GGTTGTGGCT GCTGCGGGTA ACGAAGGGCC TGGTGCTCAC
    ACTGTTGACA ATGTTGCTCC TTGGCTTTTG ACTGTTGCTG CAACTACTCT
    TGACCGGTCT TTTCCTACAA AGATCACACT TGGGAATAAT CAAACCCTCT
    TCGCTGAATC TCTGTTCACT GGACCGGAGA TTTCAACCGG TTTAGCTTTC
    TTGGACTCAG ACAGTGATGA CACTGTTGAT GTGAAGGGGA AAACAGTTCT
    TGTTTTCGAT AGTGCAACTC CAATTGCAGG GAAAGGTGTA GCAGCAGTGA
    TCCTAGCCCA AAAGCCTGAT GATCTTCTTT CTCGATGCAA TGGTGTACCA
    TGCATTTTTC CAGATTACGA GTTTGGAACT GAGATTTTAA AATACATACG
    TACCACCAGA TCTCCCACGG TGAGAATTAC TGCAGCTACT ACACTAACTG
    GTCAGCCTGC AACAACTAAG GTTGCTGCAT TCTCATGTAG AGGGCCTAAT
    TCGGTTTCAC CAGCCATTCT CAAGCCTGAT ATAGCAGCTC CGGGTGTGAG
    CATACTCGCG GCAATAAGTC CGCTTAATCC AGAAGAACAG AACGGATTTG
    GACTTCTTTC AGGGACATCA ATGTCAACTC CTGTTGTTTC TGGAATAATA
    GCTCTCCTAA AATCTCTTCA CCCTAAGTGG TCTCCTGCTG CAGTGAGATC
    AGCTTTGGTC ACAACAGCTT GGAGGACAAG TCCATCTGGA GAACCAATCT
    TTGCTGAAGG ATCAAACAAG AAGCTTGCAG ATCCATTTGA CTATGGAGGA
    GGACTTGTAA ACCCTGAAAA AGCTGCTAAA CCAGGACTTG TCTACGATAT
    GGGGATTGTG GATTACATCA AGTATATGTG TTCTGCGGGT TACAACGACT
    CTTCAATCTC TCGTGTGCTC GGTAAAAAGA CTAATTGCCC AATTCCTAAG
    CCATCAATGC TTGATATCAA CTTACCTTCA ATCACAATTC CAAATCTTGA
    GAAAGAAGTC ACACTCACAA GAACTGTAAC CAATGTTGGA CCCATCAAGT
    CAGTCTATAG AGCTGTGATC GAGTCTCCTC TCGGTATAAC TCTCACCGTG
    AACCCAACCA CACTCGTGTT TAAGTCTGCA GCTAAGAGAG TACTCACTTT
    CTCGGTTAAG GCTAAAACAA GTCACAAAGT CAACACTGGC TACTTCTTTG
    GAAGCTTAAC ATGGAGTGAT GGTGTTCATG ATGTTATAAT CCCTGTCTCT
    GTTAAGACAA CGATTTCGAT GTAATAAAAA GAGCCATATG ATGCTCATTG
    TGTTTGTTCT TATGTAATTT GTTGCAAATC TAAGTCTAAA ATGT

    Gene models with high sequence identity

    1. AT4G21650.1 [+] show detail - Subtilase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBTILISIN-LIKE PROTEASE (PLANT) 0
    HMMPanther Peptidase S8, subtilisin-related 0
    PatternScan Peptidase S8/S53, subtilisin, active site 0
    Gene3D Peptidase S8/S53, subtilisin/kexin/sedolisin 2.9e-67
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 0.0000000000017
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 0.0000000000017
    FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 0.0000000000017
    HMMPfam Peptidase S8/S53, subtilisin/kexin/sedolisin 5.6e-33
    HMMPfam Proteinase inhibitor I9, subtilisin propeptide 1.5e-21
    HMMPfam Protease-associated PA 0.0000076
    superfamily Peptidase S8/S53, subtilisin/kexin/sedolisin 3.3e-73
    superfamily Proteinase inhibitor, propeptide 0.00000058

    See the detailed result >

    AT4G21650.1

    Model type
    Protein coding
    Short Description
    Subtilase family protein
    Computational Description
    Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT4G21630.1); Has 7770 Blast hits to 6733 proteins in 1165 species: Archae - 228; Bacteria - 4634; Metazoa - 31; Fungi - 250; Plants - 1972; Viruses - 0; Other Eukaryotes - 655 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR