F05317

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05317

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05317

Determination of introduced cDNA(s)

  • RAFL09-47-N12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-N12 - Resource: pda06357

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-N12 - full reading
    GGCTTCAATT TTTGCGTTTT CTCTGCAACT CGCCGTCAAG GGTAGAAGAA 
    TTAGGGGTTC CTGTTCTTAA CTGCTTGAAG ATGACGTCTT ATGGAGATAG
    ACTGAAGTCG ACCTCCATTA ATGGAGTTAA GTTATACAAT GTTTCTTCTG
    CTCCCAATGT TCCTACTTGG CTTAATCCTA AGAAGCAACG AGCTCTCCGC
    AAAAACCCTC ATTATATGCA AAGAGTGGAG CTGATTCAGG AGTTGAAGTT
    TGAGACTGCC ACTACTAGAA TCAAAGCGAC TCCAGACGGA GAGTATCTGA
    TTGCTTCAGG CATATATCCA CCACAGGTAA AAGTTTATGA GCTAAATCAG
    CTTGCTTTGA AGTTTGAGAG GCATTTGGAC TCGGAAATAG TTGATTTCGA
    GATATTGGAT GATGACTTCT CAAAGCTTGC CTTCTTATGT GCTGATCGTT
    CTATTAATTT ACACGCCAAA TACGGGAAAC ACCACACTTT ACGAATTCCA
    AGGATGGGGA GAGATATGAC ATATGATTCC TGGTCTTGTG ATCTTCTTTG
    CGCTGCTTCC TCACCTGATC TATATAGAAT CAATTTGGAG CAGGGAAGAT
    TTCTTTCTCC TCTCAGCACT CAATCCCCAG CGCTTAATGT CGTTTCTCGA
    AGCAACCTCC ATGGATTAGT TGCTTGTGGT GGTGAGGATG GTGCTGTGGA
    ATTTTTTGAT ATGAGAATGA AATCATCTGC TGCTAGAATT AACGCGGTCA
    CACATGGTGG TGATGCTGCT GCGGAGGTTA CTGCTATAGA GTTTGATGAC
    AGTGAAGGTC TTCAAGTAGC TGTCGGGAGT AGCGCGGGAA AGGTATTCAT
    ATACGACTTG CGTACTTCAA CTCCCATAAG AGTGAAGGAT CACATGTACG
    AGAGCCCAAT TTTGAATATT AAGTGGCAAC GGACTCTTAA TACTCAACAA
    CCTAAGTTGA TTACTACCGA CAAACACATT GTTAGAATAT GGGATCCAAA
    CACGGGAGAA GGTATGACCA GCATTGAACC GACTCAAGGA GGAATAAACG
    ACATTTGTGT GTTCCGTGGA AGCGGACTTA TGCTTCTTGC TTTAGACTCT
    AGCCTAATCC CATCTTACTT CATACCTGAA CTCGGTCCTG CCCCCAAATG
    GTGTTCTCCT CTTGAAAATC TAACGGAAGA GTTGGAGGAA AGTGCACAGA
    CAACTATTTA TGATAATTAC AAATTTTTGG CAATGGAAGA TCTGGAGAAG
    TTGCAGCTAA CTCATTTGAT TGGAACAGAT CTTTTGAAAG CATCTATGCA
    TGGATATTTT ATTAATTACC ATTTGTACAA AAAGGCTTTA GCAGTGATTG
    AACCTTTTGC ATTTGATGAT TACTTAGAAC GTAGGAAGCA AGAGAAGTTA
    GAAGAGCAGC GTACGCAGAG AATCACAAAA AAGAGACGGT TGCCAAAGGT
    TAACCGAGAC CTTGCAGCAA GGCTTCATGG GGACGAATCA GAGGAGGAAA
    ATAAAACTGC CGAGGATGGG GAGGCCACCA AGAAAGTGCT GAAAAAGAAG
    AAACCCATAC TTACTGACGA GCATTTCGTA GATGGTCGGT TTGGTTCGAT
    GTTCCAAAAT CCGGACTTCC AAATTGATAA GGACTCATAT GAATATGGTG
    TCCTACACCC TGTTGCTTCT TCGAAGAAGC AACCTTCTCT GTTAGATGAA
    CACTTTGAAG CTGTATCAGA TGATGACGAG AACAGTGATT CTGATGCATC
    ACAGCCTTCA GATGACGAGG CCGACGATGG AGACGCAACT AGGCCAAGCA
    AGAAAGCGAG AACTCCGAAG TTGTATGAAG TGAAAGATGA GCGGCATGCC
    GCAGCTTATC ACAACCGCAC TTCACTGGCT AAAGAAGATA GTCTTCCTAT
    GGGCGAGCGT GTCAAGGCTA TAGAGAACCG GCGTGGCAAC TTTGGAGGCT
    CGAAAGATAT CAAATTCGGT CCTGGAGGAT CACGGGAGTT TTCTTTCAAG
    GCGAGAGGGT CATCAAAGTA CAAAGAAGAT AGAGACGATG AGTATGAAGA
    TGGGCAAAGA AACAAGAGGA GAGGAGTTCA GTCTCTTGGA CTGAAATCAA
    CAAATATTAG AGGCGGTTTC AGAGGTAGAG GAGGTGGTGG TTTTAGAGGG
    AGAGGAGGCG GCGGTTCCCG GGGAAAAGGT GGCCGTGGTG GTGGGCGTGG
    AAGAGGCCGG CAATGATAAA TGTAGCTTTT CAGGGGCTTT ATTAGATTTG
    AAAAATGTGT CACCTACTAT TGAGAATCTT GAAACTTAAT TGATCACATA
    TACAATTTTG G

    Gene models with high sequence identity

    1. AT3G56990.1 [+] show detail - embryo sac development arrest 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 1.6e-24
    HMMPfam NUC153 0.000000000041
    Gene3D WD40/YVTN repeat-like-containing domain 0.00000000000051
    HMMPanther UNCHARACTERIZED 8.5e-266

    See the detailed result >

    AT3G56990.1

    Model type
    Protein coding
    Short Description
    embryo sac development arrest 7
    Computational Description
    embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR