F05349

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05349

Determination of introduced cDNA(s)

  • RAFL05-03-L01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-03-L01 - Resource: pda02431

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-03-L01 - full reading 
    GCACTCTTCT TCTTCCCTGT CGCCGCATCA AAGAGAACTG AAGCAATAGG 
    CTTTTGAAGC TCTCTGCATA AACATGACTT TCAAGCGCAG GAATGGTGGC 
    AGGAACAAGC ATAACCGTGG TCATGTGAAA CCAATCAGGT GTTCCAACTG 
    TGGAAAGTGT TGCCCCAAGG ACAAGGCGAT TAAGAGATTT ATCGTAAGGA 
    ACATTGTTGA GCAGGCTGCT ATTAGAGATG TTCAAGAAGC TAGCGTCTAC 
    GAAGGTTACA CTCTCCCAAA GCTTTACGCT AAGACGCAGT ACTGTGTCTC 
    GTGTGCTATC CATTCTCACG TTGTGAGAGT CCGATCCCGC ACCAACCGTA 
    GAGTTCGTAC CCCACCACCT CGTTTTGCCA GACGCAAGGA GGATACACCC 
    AAGCCTGCAC AACCTGGTCA GGCTCCTCGC CCTGCCGGTG GTGCTCCTGC 
    TGCTCCTCGT GCCTGAAGAC TTCAAGAAGC TGGCAATCCG AAACTTCTTA 
    TATTCTAGTT TCAATCTCTC TTTTGTCTGA AATTTTTGAA GATGTTTTCT 
    ACATTTTGTT AAAGATGATT TCGCCATATT GGAGCTTTAA ACGTTTCAGA 
    CC

    Gene models with high sequence identity

    1. AT3G56340.1 [+] show detail - Ribosomal protein S26e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S26e 2e-53
    HMMPanther Ribosomal protein S26e 2.2e-92
    PatternScan Ribosomal protein S26e 0

    See the detailed result >

    AT3G56340.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S26e family protein
    Computational Description
    Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40510.1); Has 761 Blast hits to 761 proteins in 271 species: Archae - 53; Bacteria - 0; Metazoa - 311; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR