F05407

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05407

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05407

Determination of introduced cDNA(s)

  • RAFL05-15-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-D11 - Resource: pdz87491

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-D11 - 5 prime EST
    TAAACCAAAA TCCTCAAAAG CCTATTTGGG GGATCATCAA CCTTCTATCA 
    TCACCATGGA TCCTTACAAG TATCGTCCTT CAAGCGCGTA CAACGCCCCA
    TTCTACACCA CAAACGGTGG TGCTCCAGTC TCCAACAACA TCTCTTCCCT
    CACCATCGGA GAAAGAGGTC CGGTTCTTCT TGAGGATTAT CATTTGATCG
    AGAAGGTTGC TAATTTCACC AGAGAGAGGA TCCCTGAGAG AGTGGTTCAT
    GCTAGAGGAA TCAGTGCTAA GGGTTTCTTT GAAGTCACCC ATGACATTTC
    AAACCTCACT TGTGCTGATT TTCTCAGAGC CCCTGGTGTT CAAACTCCGG
    TTATTGTCCG TTTCTCCACC GTTGTCCACG AACGTGCCAG TCCTGAAACC
    ATGAGGGATA TTCGTGGTTT TGCTGTCAAG TTTTACACCA GAGAGGGAAA
    CTTTGATCTT GTTGGGAACA ACACTCCGGT GTTCTTCATC CGTGATGGGA
    TTCAGTTCCC GGATGTTGTC CACGCGTTGA AACCTAACCC GAAAACAAAC
    ATCCAAGAGT ACTGGAGGAT TCTGGACTAC ATGTCCCACT TGCCTGAGAG
    TTTGCTCACA TGGTGCTGGA TGTTTGATGA TGTTGGTATT CCACAAGATT
    ACAGGCACAT GGAGGGTTC

    Gene models with high sequence identity

    1. AT1G20620.5 [+] show detail - catalase 3
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-D11 - 3 prime EST
    GCTGCTTCAA GAAACATTGA TTTATTGTAA AAAGAGATTA CAAAGACAGT 
    GAGAGTAGAA AGGAAGGAAA CATGAGTTTT TGGGATTACA AGCATTATTA
    TTATATAGAC AAGAAACAAC AACACATGTG ATTATCTTTT TGACGGATTT
    AACGACCAAG CGATGATAGA TCGATGAGAT TGATTGTACC TCACATAGAC
    TGAGCTTATA TGGAGATTGG CCTCTAGATG CTTGGCCTCA CGTTCAGACG
    GCTTGCAAGT TTCTGTCCCA AGGATCGATC AGCCTGAGAC CAGTAAGAGA
    TCCAGATGCC GCGGATCTCG TGGGTGAGAC GTGGCTCCGA TAGAATCTCC
    ACCCATCTCT TAACAAACCT GTCTTGCCTG TCTGGTGCCC ATGATCTGTA
    CCTGTCTCCA GCCTGTTTGA AGTTGTTCTC TTTCTTGATG ACGCACTTTG
    TTCGAATTCC AGTGTAGGAG TTTGTAGGGG TGGGAACTTT CTCAGCGCAG
    CGGACAGGAT CAAACTTTGA GGGGTAGTAA TTGATCTCCT CATCTCTGTG
    CATGAAGTTC ATAAAACCTT CATGGTGATT GTTGTGGTGA GCACATTTGG
    GAGCATTGAC TGGAAGCTGC AAATAATTCG GTCCAAGGCG ATGTCTCTGA
    GTGTCACCAT AAGCAAAGAT CCTACACTGG AGCAGCTTGT CGTCTGAGTA
    GT

    Gene models with high sequence identity

    1. AT1G20620.4 [+] show detail - catalase 3
      E-value: 0; Score: 100.00

    AT1G20620.4

    Model type
    Protein coding
    Short Description
    catalase 3
    Curator Summary
    Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.
    Computational Description
    catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT1G20620.5

    Model type
    Protein coding
    Short Description
    catalase 3
    Curator Summary
    Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.
    Computational Description
    catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR