F05442

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05442

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05442

Determination of introduced cDNA(s)

  • RAFL09-72-L18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-72-L18 - Resource: pdz88299

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-72-L18 - 5 prime EST
    GATTCTGAAT AAGATCAAGA ATTTACAGTA TTTGAAAAAA TACAAAATGG 
    CGAAAATCTA CCGGAAGTTG ACAGGCTACG GTGGTGAAGG AGGGCGTGAA
    TGGGACGATG ATGTATATGA GGGTGTAAGA AAAGTGTATG TAGGACAAGA
    TATCAATCGT ATCACTTACG TCAAATTCGA GTATGTGAAG GAAGACGGCC
    AAGTCGTAAC AACTGAATAT GGGAAAATCA TTCAACAACC CAAAGAGTTT
    GTACTTCAAT ATCCGGACGA ACATATCATA GCGGTGGAAG GAAACTATCG
    CGGAGTGGCT CTATGTGCCA CAGAGGTGAT CACAAACCTC GTCTTCAAGA
    CCTCAAAGGG TAGAAAGTCA CCACTGTTTG GTCCAAACTT GCTTGGAATT
    ACGACCGGTA CAAAGTTCGT TATTGAGGAT GGAGGAAAGA AGATCGTAGG
    GTTTCATGGA CGGTCGGGTA ATGCTCTCGA CGCGCTTGGA GTTTACTTTG
    TACATGGCTC TCTAACAACG TCTTCCGCCT GTTTACAAGC TGGATGCCCA
    AGGTGGTACA GACCGGGCGT GT

    Gene models with high sequence identity

    1. AT2G39330.1 [+] show detail - jacalin-related lectin 23
      E-value: 0; Score: 99.65

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-72-L18 - 3 prime EST
    GATTTATTGA ATAGTTGAAG AGAGCACACC AATTCTTATT GGACATATTT 
    GACAGAAACA GTAAGTTACA AACACATCAA AAGTAGTAGA GTAAACACAC
    CAATCCTTAT TGAATGTTTT CATTTAGTCG ACATGGCACT GGCTGGTTTT
    ACTTATATAA TAAAAGGTTT TTCACTTGGT GTTGGTAATG GGCACGACAG
    TGACTCGATG CTGTGAACAA CATCACTAGC TTGTCCGTGG AATCGACGAT
    CTTGTGGCCT TTCTCTCCAA GCGAGAACTT CTCACCCGAA TCCATTCCGA
    ATGGAGTTGA CTCCCTTTTG TCGTCTTAAA CTGAAGAAGA TAATCATTGG
    TGTCTCGACT CCGAAAATCT TATCGTAATA GCCATCTATG GCCGTGAGAT
    ATTC

    Gene models with high sequence identity

    1. AT2G39330.1 [+] show detail - jacalin-related lectin 23
      E-value: 0; Score: 99.02

    AT2G39330.1

    Model type
    Protein coding
    Short Description
    jacalin-related lectin 23
    Computational Description
    jacalin-related lectin 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 22 (TAIR:AT2G39310.3); Has 1977 Blast hits to 736 proteins in 44 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 4; Plants - 1953; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR