F05451

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05451

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • coiled (PATO:0000404)
    (Stem::Shape::spiral)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05451

Determination of introduced cDNA(s)

  • RAFL05-12-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-L08 - Resource: pda09324

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-L08 - full reading
    TGGGATCTCA AAACCCTAAT ATCTGAACTT CGCCGTCGAG AGCATCCATG 
    GGTCGTGTCA TCAGAGCTCA ACGTAAGGGT GCGGGTTCCG TCTTCAAATC
    CCACACTCAC CACCGCAAAG GTCCGGCTAA GTTCCGTAGC CTCGATTTCG
    GCGAGAGAAA TGGTTACCTC AAGGGCGTCG TGACGGAGAT CATCCACGAT
    CCTGGTCGTG GTGCTCCTCT TGCTCGTGTC ACTTTCCGTC ATCCTTTCCG
    TTTCAAGAAA CAAAAGGAGC TCTTCGTCGC CGCCGAAGGT ATGTACACCG
    GTCAGTTCTT GTACTGCGGT AAGAAAGCTA CTCTCGTCGT TGGAAATGTT
    CTCCCTCTTA GATCTATTCC TGAAGGAGCT GTTGTCTGCA ACGTCGAGCA
    TCACGTCGGT GATCGTGGTG TCCTCGCTAG AGCTTCTGGT GATTACGCCA
    TTGTTATCGC TCACAACCCT GACAGCGACA CTACTAGGAT TAAGTTGCCA
    TCGGGTTCGA AGAAGATTGT CCCAAGTGGA TGCAGGGCTA TGATTGGACA
    AGTTGCTGGA GGTGGAAGAA CTGAGAAGCC GATGCTCAAG GCAGGAAACG
    CGTACCACAA GTACCGTGTG AAGAGGAACT CATGGCCTAA GGTTCGTGGT
    GTGGCTATGA ATCCAGTGGA GCATCCTCAT GGAGGAGGTA ACCATCAGCA
    CATTGGTCAC GCCAGTACTG TTAGGCGTGA TGCACCTCCT GGACAGAAGG
    TTGGTCTTAT TGCTGCAAGG AGGACTGGTC GTCTCAGAGG TCAAGCTGCT
    GCTTCAGCTG CCAAGGCAGA CTAGAGTTAA AAGAGATAAA CTTTGTTTCT
    CTTGTTTTCT ATGTTTCAAG TTTTGTTGTC TGTGTTTCCT TTTGAACCTC
    ATTCTGAAAT CCTAAAAGAT TTTTATGATA AACCTTTCTC TCTT

    Gene models with high sequence identity

    1. AT2G18020.1 [+] show detail - Ribosomal protein L2 family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S RIBOSOMAL PROTEIN L8 6.3e-137
    HMMPanther Ribosomal protein L2 6.3e-137
    HMMPIR Ribosomal protein L2 3.1e-107
    Gene3D Nucleic acid-binding, OB-fold 1.1e-16
    Gene3D Ribosomal protein L2, domain 3 4e-34
    HMMPfam Ribosomal protein L2 1.5e-41
    HMMPfam Ribosomal protein L2 1.3e-16
    PatternScan Ribosomal protein L2 0
    superfamily Translation protein SH3-like 3.9e-54
    superfamily Nucleic acid-binding, OB-fold-like 2.8e-22

    See the detailed result >

    AT2G18020.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L2 family
    Computational Description
    embryo defective 2296 (EMB2296); FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, guard cell, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein L2 (InterPro:IPR002171), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, domain 3 (InterPro:IPR014726), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: Ribosomal protein L2 family (TAIR:AT4G36130.1); Has 10660 Blast hits to 10653 proteins in 3642 species: Archae - 317; Bacteria - 5675; Metazoa - 457; Fungi - 292; Plants - 1219; Viruses - 0; Other Eukaryotes - 2700 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR