F05520

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05520

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05520

Determination of introduced cDNA(s)

  • RAFL06-89-E13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E13 - Resource: pda09464

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E13 - full reading 
    CCCGACAACA ACAACCACTT CTCTTCCATT CCACAAGGAC CACAATCACT 
    TCAACCTTAA TCGAAATCTC CGATCGAGAA ATAGGAGAAT GACGACGCCT 
    CCAGTTCTAT CTCTCGCTCT TCCTTCAGAT ACTGGTCGTG TTCTTAGTAT 
    CCAATCCCAC ACTGTTCAGG GATATGTTGG TAACAAATCA GCTGTCTTTC 
    CTCTTCAATT GTTGGGGTAT GATGTGGATC CAATCAACTC TGTACAATTC 
    TCGAATCATA CAGGGTATCC TACATTTAAA GGACAGGTTT TGAATGGTCA 
    GCAATTGTGT GATTTGATTG AAGGTCTTGA AGCAAACGAT TTGTTGTTCT 
    ACACTCATGT ATTAACAGGT TATATTGGAT CAGTGTCATT CCTGGATACA 
    ATTTTGGAGG TTATTAATAA GCTTCGCTCT GTAAACCCGA ATCTTACATA 
    TGTATGTGAT CCGGTGATGG GTGATGAAGG AAAGTTGTAT GTGCCTGAAG 
    AACTGGTACA TGTTTATCGT GAAAAGGTTG TTCCCTTGGC TTCTATGTTG 
    ACTCCTAACC AGTTTGAGGC AGAGAAGTTA ACAGGACTAA GGATAAATTC 
    TGAGGAAGAT GGCAGGGAAG CTTGTGCTAT TCTTCATGCA GCTGGTCCTT 
    CAAAGGTTGT GATCACTAGC ATTACTATAG GAGGCATTCT ATTACTTATC 
    GGAAGCCATC AGAAAGAAAA GGGTCTCAAG CCTGAGCAAT TCAAGATTTT 
    GATACACAAA ATCCCTGCTT ATTTTACGGG AACAGGAGAT CTCATGACTG 
    CTCTTCTACT TGGTTGGAGT AATAAATACC CTGACAACCT TGACAAAGCA 
    GCCGAGCTTG CAGTTTCAAC GTTGCAGGCG CTTTTGCGAA GGACGCTTGA 
    TGATTACAAA CGAGCTGGGT ATGATCCTAC CTCAAGCAGT TTGGAGATTA 
    GATTGATACA AAGCCAGGAA GACATTCGCA ACCCGAAGGT CGAACTGAAA 
    GCTGAAAGAT ACAGCTGAAG CAGGTGAAAA AATGTAACAT ATTTATCTGA 
    AATAAGAAAA CATAGATGAT TTTGGGGATA CAATAATTAT GTTGCACGAT 
    TCTTTTATGC ATATAAAAGA GTACAGACTT CAGAG

    Gene models with high sequence identity

    1. AT5G37850.1 [+] show detail - pfkB-like carbohydrate kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase 6.3e-75
    superfamily Ribokinase-like 2e-69
    HMMPfam Phosphomethylpyrimidine kinase type-1 4e-15
    HMMPanther PYRIDOXINE KINASE 1.5e-123
    Gene3D no description 2.6e-84

    See the detailed result >

    AT5G37850.1

    Model type
    Protein coding
    Short Description
    pfkB-like carbohydrate kinase family protein
    Curator Summary
    Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.
    Computational Description
    SALT OVERLY SENSITIVE 4 (SOS4); FUNCTIONS IN: pyridoxal kinase activity, kinase activity; INVOLVED IN: pyridoxine biosynthetic process, hyperosmotic salinity response, trichoblast differentiation, pyridoxal 5'-phosphate salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase (InterPro:IPR004625), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); BEST Arabidopsis thaliana protein match is: thiamin biosynthesis protein, putative (TAIR:AT1G22940.1); Has 6182 Blast hits to 6179 proteins in 1931 species: Archae - 81; Bacteria - 5137; Metazoa - 195; Fungi - 190; Plants - 75; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR