F05531

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05531

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05531

Determination of introduced cDNA(s)

  • RAFL06-76-L04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-76-L04 - Resource: pda03641

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-76-L04 - full reading
    AGACGAGAGT CCTCAAATCC ATTTTCTCTC TCTATCTCTC TTTATCCCTT 
    CGTCTTCTTC CTCGGCGACA CCACTTGCAG GCGCTAACTC GACGAAGAAG
    GAAAAGATTT TCCGGTGTTA GTCACATCGA CGCAGAAGGA ACAGAGAAGA
    AGACGAGAGT CAGCTTCATT ATCAACTTTA GTTCTTCGAC GTCTACGCAC
    ATGAACCGAC GGCGACTTTT GGTATCGGCG ACACTGCTCT CGTATTTGCT
    CTACGGCATG GCTCTCGTCT CCGTTGAAGC CTCCGGTGGT GAAAAGCTTA
    GAGATAATCT GGATTTGACT AAAACGACGA CGTCGTCACC GAGCATATCA
    CATCGGAAAA TGCTGCTTCT CTCTCCTGGT ACTGAACTTC TCTCTCTGTG
    GTCTCTCTGT GAATGCACAA CTTCCTGATG CGTTTCGTCC TTTTTGTTTT
    CACAGCGTCG TCAGTCTTTT GCACGTCTGT GTTTTCTTGC CCCTGCTTTT
    GTTTCTTTGT TCGTTATACT TTTGTGGACC CACTTAAGAG CCTCATGACT
    TATCTTAAGA GTAAAAACAA ATAACATCAT CTTAAGATTG TGTGC

    Gene models with high sequence identity

    1. AT4G24972.1 [+] show detail - tapetum determinant 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G24972.1

    Model type
    Protein coding
    Short Description
    tapetum determinant 1
    Curator Summary
    Encodes a novel small protein which is similar to proteins of unknown function from other plant species. TPD1 is involved in cell specification during anther and pollen development. Identified in a screen for male steriles. Mutants lack tapetal cells and have an increased number of microsporocytes. Expressed in flower buds, leaves and young seedlings. In anthers, TPD1 is expressed throughout pollen development in parietal cells and sporocytes. Physically interacts with the LRR kinase EMS1 and that interaction results in phosphorylation of TPD1.
    Computational Description
    TAPETUM DETERMINANT 1 (TPD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell fate determination, anther development; LOCATED IN: endomembrane system; EXPRESSED IN: microsporocyte, floral meristem, flower, anther, leaf; EXPRESSED DURING: seedling growth; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR