F05535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05535

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05535

Determination of introduced cDNA(s)

  • RAFL09-13-B09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-13-B09 - Resource: pda01703

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-13-B09 - full reading 
    GTCTTCCGTT GCGTGAGATA TTATTGAACG GTGTTTGTTA TTCGGAGAAG 
    AAGAAGAAGA AGAACTGAAG AAGCATATTC GACGGTCACC ACCAAACCTC 
    TTCCGTCGGA TTTTCACTCT CCGTTTATCG AACATCTGAG ATCTCTCTCC 
    ACTTCCGTCA CCGAAGATGC ATTCCAGTCA TCTTCTTCTC GAGGAGCCGA 
    TCAGGATGGC TTCAATCCTC GAGCCTTCCA AATCTAGTTT CTTCCCGGCA 
    TTGACTAAGA TCGTCGGAAC TCTAGGTCCT AAATCCCGAT CCGTCGAGGC 
    TCTCTCCGGC TGTCTCAAAG CCGGCATGTC TGTGGCTCGA TTTGATTTCT 
    CGTGGGGAGA TGCTGATTAT CACCAGGAGA CACTTGATAA TTTGAAAGTT 
    GCTGTGAGGA GCACTAAGAA GCTTTGTGCT GTTATGCTTG ATACTGTTGG 
    ACCTGAGCTA CAAGTTATTA ACAAATCTGA GAAAGCTATT ACTTTGAAAG 
    CTGATGGCCT TGTAACTTTG ACACCGAATC AAGATCAAGA AGCTTCTTCT 
    GAAGTTCTTC CCATTAATTT CAATGGACTT GCCAAGGCAG TGAAGAAAGG 
    AGACACCATC TTCGTTGGGC AATACCTATT CACTGGTAGT GAAACAACTT 
    CAGTTTGGCT CGAGGTTGAT GAAGTTAAAG GAGATGATGT CATTTGCCTT 
    TCAAGGAATG CTGCTACTCT GGCTGGTTCT TTGTTCACTT TACACTCCTC 
    TCAAGTTCAC ATTGATCTCC CAACGCTTAC AGAGAAGGAT AAGGAGGTTA 
    TAAGCACATG GGGAGTTCAA AATAAAATCG ATTTTCTCTC ATTGTCTTAT 
    TGTCGTCATG CTGAGGATGT TCGCCAGACC CGTGAAATGC TTAAAAAGTT 
    GGGCGACCTC TCTCAAACAC AAATATTTGC TAAGATTGAG AACGTAGAGG 
    GACTAACCCA CTTCGATGAG ATTCTACAAG AAGCTGATGG CATTATTCTT 
    TCTCGTGGGA ATTTGGGTAT AGATTTACCC CCGGAAAAGG TGTTTTTGTT 
    TCAAAAGGCT GCTCTTTACA AGTGCAACAT GGCTGGAAAG CCAGCTGTTC 
    TTACCCGTGT TGTTGACAGT ATGACTGACA ACTTGCGACC AACTCGTGCT 
    GAGGCCACGG ATGTTGCTAA TGCTGTTTTA GATGGAAGTG ATGCAATTCT 
    TCTTGGTGCT GAGACCCTTC GTGGATTGTA CCCTGTTGAG ACAATATCAA 
    CTGTTGGTAG GATCTGTGCT GAGGCAGAAA AGGTTTTCAA TCAAGATTTG 
    TACTTTAAGA AGACTGTCAA GTATGTTGGA GAACCAATGA CTCACTTGGA 
    ATCGATTGCT TCTTCAGCTG TACGGGCAGC CATTAAGGTT AAGGCATCCG 
    TAATTATATG CTTCACCTCT TCTGGAAGAG CAGCCAGATT GATTGCCAAA 
    TACAGGCCAA CGATGCCGGT TATTTCTGTT GTCATTCCCC GGGTTAAGAC 
    AAATCAACTG AAATGGAGCT TTAGTGGAGC TTTTGAGGCG AGGCAGTCAC 
    TTATTGTCAG AGGCCTCTTC CCTATGCTTG CTGACCCTCG TCACCCTGCG 
    GAATCTACAA GTGCGACAAA CGAGTCAGTC CTGAAGGTTG CTCTAGACCA 
    TGGGAAGCAT GCTGGAGTAA TCAAGTCGCA TGACAGAGTA GTGGTGTGTC 
    AGAAAGTTGG TGATGCATCT GTGGTTAAGA TCATTGAGCT TGAGGATTAA 
    CTTTTGCCTC GCAAAAACAT TATATAATTG GCTGCATTTT GGGTTGCCTT 
    GAATTGATGA TAACTCCCAA TGCCGGAGTG AAAATATTAT CTCCGGGACT 
    TCTGGTTTCT TTTTGTATAC TTAGGAGATT TGATGTCTCT AAGGTTTCAG 
    CTATATTTGA TTACCTTCAA ATGTACGCAT ATGATAAAAG TATACAATGC 
    CTAGCAATTT TATAATAAGC TGTTACATTC CCTT

    Gene models with high sequence identity

    1. AT3G52990.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 6.6e-71
    superfamily Pyruvate kinase, C-terminal-like 4e-27
    superfamily Pyruvate kinase, beta-barrel-like 1.4e-08
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 1.4e-66
    Gene3D Pyruvate kinase, alpha/beta 6.3e-18
    HMMPfam Pyruvate kinase, barrel 2.9e-93
    HMMPfam Pyruvate kinase, alpha/beta 8.2e-23
    HMMPanther Pyruvate kinase 5.2e-206
    HMMTigr Pyruvate kinase 2.5e-99
    FPrintScan Pyruvate kinase, barrel 1.2e-43
    FPrintScan Pyruvate kinase, barrel 1.2e-43
    FPrintScan Pyruvate kinase, barrel 1.2e-43
    FPrintScan Pyruvate kinase, barrel 1.2e-43
    FPrintScan Pyruvate kinase, barrel 1.2e-43
    FPrintScan Pyruvate kinase, barrel 1.2e-43

    See the detailed result >

    AT3G52990.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Computational Description
    Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT2G36580.1); Has 9836 Blast hits to 9793 proteins in 2683 species: Archae - 167; Bacteria - 5933; Metazoa - 534; Fungi - 219; Plants - 549; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR