F05540

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05540

Determination of introduced cDNA(s)

  • RAFL06-87-L05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-L05 - Resource: pda07764

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-L05 - full reading 
    AATAAACGGA AAAACGAAAA GTGAAGAAAA ATGGGAGTAG TACTGATCGA 
    TGGATCAACG GTACGATCTT TTGTAGACGA CGAAGAGCAA TTCAAAAAAA 
    GCGTCGACGA GAGGTTCGCA GCTCTGGATC TGAACAAAGA CGGCGTTTTA 
    TCGCGATCGG AGCTACGAAA AGCGTTTGAA TCGATGAGGC TACTTGAATC 
    GCACTTTGGC GTTGATGTGG TGACTCCTCA GGACGAGCTG ACGAACCTCT 
    ACGATTCGAT CTTCGAGAAA TTCGATACGG ATCAAAGCGG TTCTGTGGAT 
    CTGGAGGAGT TTAGATCGGA GATGAAGAAG ATCGTGCTTG CGATTGCTGA 
    TGGGCTTGGA TCTTGTCCGA TTACGATGGT GTTAGATGAT GATGATGATA 
    ATTTCTTGAA AAAAGCTGCG GATTTGGAAG CTTCCAAGCT TGAGAAAGCT 
    TCTTCGTAAT GGTGATGGAT GGTTTTGGGA TCTTTTTGAA ACTGTTTTCG 
    TTTTGTTGTT GTTCATGTTT TGATGTAAGT GAGAGTTTGA ATAAATAAAA 
    CTTTGTGAGA TTTTTGTGCT TT

    Gene models with high sequence identity

    1. AT2G44310.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam EF-hand 2.6e-06
    superfamily EF-hand 1.2e-11
    ProfileScan EF-HAND 2 11.556
    ProfileScan EF-HAND 2 11.501
    HMMPanther CALCIUM BINDING PROTEINS 3.2e-06
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    Gene3D EF-hand-like domain 4.7e-08
    HMMSmart Calcium-binding EF-hand 0.11
    HMMSmart Calcium-binding EF-hand 0.01

    See the detailed result >

    AT2G44310.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G54530.1); Has 278 Blast hits to 269 proteins in 34 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR