F05547

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F05547

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • dark green (PATO:0001249)
    (Stem::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F05547

Determination of introduced cDNA(s)

  • RAFL05-13-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-B02 - Resource: pda02559

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-B02 - full reading 
    GATCGACAAA TAGGGTTTAG AATCCACACA CCCAAATCGG AAGGCGAAGA 
    AAATGGAAGG ATGGGATCCG AACACGAAGT CGACGTTAAC GCGAATACCG 
    CTTCTGACGA CAAAGGCGGG TCCAAGAGAC GGCGCGGCAT GGACGCAGAG 
    GCTGAAAGAG GAGTACAAGT CTCTGATTGC GTATACCCAA ATGAACAAGT 
    CCAACGACAA TGACTGGTTC CGTATCTCCG CTTCCAATCC TGAGGGCACG 
    CGTTGGACTG GCAAGTGTTG GTATGTTCAC AACCTTCTCA AATACGAATT 
    CGATCTCCAG TTCGATATCC CGATTACCTA TCCAGCCACT GCTCCTGAGC 
    TTGAGCTGCC TGAGATTGAC GGCAAGACTC AAAAGATGTA TCGAGGTGGG 
    AAGATATGTT TGACTGTGCA TTTCAAGCCT CTATGGGCCA AAAACTGTCC 
    TCGGTTTGGT ATAGCACATG CACTTTGTTT GGGGCTCGCT CCGTGGTTAG 
    CTGCAGAGAT TCCAATTCTT GTGGACTCCG GCGCGATTAA GCACAAAGAT 
    GACGCAGCCA CATCTGCGGA ATCTTAAATC TATGTAACCT TTCTATCAAT 
    CTCAGAAATG TTGAGGTGTT TATCAGTAAT AGCTGAACTC AGAAATGACT 
    GAGGTGGATG CGTCTACCCT ATAAATACAC TTACATGAAA CCCAATAAAG 
    ATTTAAGCTA TTGCAATGTT TTT

    Gene models with high sequence identity

    1. AT1G27530.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Ubiquitin-fold modifier-conjugating enzyme 1 4.8e-126
    HMMPanther Ubiquitin-fold modifier-conjugating enzyme 1 8.5e-139
    HMMPfam Ubiquitin-fold modifier-conjugating enzyme 1 9e-88
    superfamily Ubiquitin-conjugating enzyme/RWD-like 6e-08

    See the detailed result >

    AT1G27530.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR